CRAN Package Check Results for Maintainer ‘Sam Rogers <biometrytraining at adelaide.edu.au>’

Last updated on 2025-04-12 22:52:32 CEST.

Package	ERROR	NOTE
biometryassist	1	13

Package biometryassist

Current CRAN status: ERROR: 1, NOTE: 13

Additional issues

M1mac

Version: 1.2.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘install_asreml.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 1.2.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: heat_map.Rd: facet_wrap Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 1.2.1
Check: tests
Result: ERROR Running ‘testthat.R’ [114s/103s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(biometryassist) > > test_check("biometryassist") Starting 2 test processes [ FAIL 1 | WARN 4 | SKIP 117 | PASS 173 ] ══ Skipped tests (117) ═════════════════════════════════════════════════════════ • On CRAN (110): 'test-des.R:8:5', 'test-des.R:21:5', 'test-all-w2.r:10:5', 'test-all-w2.r:25:5', 'test-all-w2.r:39:5', 'test-all-w2.r:53:5', 'test-all-w2.r:67:5', 'test-all-w2.r:84:5', 'test-all-w2.r:102:5', 'test-all-w2.r:121:5', 'test-all-w2.r:148:5', 'test-all-w2.r:179:5', 'test-all-w2.r:195:5', 'test-all-w2.r:210:5', 'test-all-w2.r:224:5', 'test-all-w2.r:235:5', 'test-all-w2.r:249:5', 'test-all-w2.r:263:5', 'test-all-w2.r:279:5', 'test-all-w2.r:292:5', 'test-all-w2.r:310:5', 'test-all-w2.r:328:5', 'test-all-w2.r:350:5', 'test-all-w2.r:369:5', 'test-all-w2.r:399:5', 'test-all-w2.r:432:5', 'test-heatmap.R:18:5', 'test-heatmap.R:30:5', 'test-heatmap.R:35:5', 'test-heatmap.R:40:5', 'test-heatmap.R:45:5', 'test-heatmap.R:52:5', 'test-heatmap.R:59:5', 'test-mct.R:33:5', 'test-mct.R:77:5', 'test-mct.R:96:5', 'test-mct.R:109:5', 'test-mct.R:117:5', 'test-mct.R:165:5', 'test-mct.R:174:5', 'test-mct.R:261:5', 'test-mct.R:273:5', 'test-mct.R:289:5', 'test-mct.R:313:5', 'test-design.R:9:5', 'test-design.R:21:5', 'test-design.R:30:5', 'test-design.R:38:5', 'test-design.R:49:5', 'test-design.R:63:5', 'test-design.R:76:5', 'test-design.R:88:5', 'test-design.R:99:5', 'test-design.R:111:5', 'test-design.R:123:5', 'test-design.R:148:5', 'test-design.R:159:5', 'test-design.R:169:5', 'test-design.R:177:5', 'test-design.R:189:5', 'test-design.R:202:5', 'test-design.R:215:5', 'test-design.R:226:5', 'test-design.R:237:5', 'test-design.R:269:5', 'test-design.R:389:5', 'test-design.R:490:5', 'test-design.R:507:5', 'test-design.R:516:5', 'test-design.R:548:5', 'test-design.R:554:5', 'test-design.R:560:5', 'test-design.R:566:5', 'test-design.R:580:5', 'test-design.R:597:5', 'test-design.R:612:5', 'test-design.R:627:5', 'test-design.R:642:5', 'test-design.R:657:5', 'test-design.R:671:5', 'test-design.R:699:5', 'test-design.R:724:5', 'test-design.R:744:5', 'test-design.R:815:5', 'test-design.R:827:5', 'test-summary_graph.R:8:5', 'test-summary_graph.R:14:5', 'test-summary_graph.R:20:5', 'test-summary_graph.R:26:5', 'test-utility_functions.R:7:5', 'test-resplot.R:6:5', 'test-resplot.R:13:5', 'test-resplot.R:24:5', 'test-resplot.R:55:5', 'test-resplot.R:70:5', 'test-resplot.R:94:5', 'test-resplot.R:106:5', 'test-zzz_install_asreml.R:4:5', 'test-zzz_install_asreml.R:13:5', 'test-zzz_install_asreml.R:21:5', 'test-zzz_install_asreml.R:30:5', 'test-zzz_install_asreml.R:38:5', 'test-zzz_install_asreml.R:47:5', 'test-zzz_install_asreml.R:57:5', 'test-zzz_install_asreml.R:67:5', 'test-zzz_install_asreml.R:80:5', 'test-zzz_install_asreml.R:92:5', 'test-zzz_install_asreml.R:101:5', 'test-variogram.r:22:5', 'test-variogram.r:52:5' • requireNamespace("asreml", quietly = TRUE) is not TRUE (7): 'test-logltest.R:4:5', 'test-logltest.R:26:5', 'test-mct.R:127:5', 'test-mct.R:181:5', 'test-mct.R:235:5', 'test-mct.R:245:3', 'test-resplot.R:28:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-resplot.R:82:5'): Residual plots work for sommer ─────────────── Error in `fitted(model.obj)$dataWithFitted`: $ operator is invalid for atomic vectors Backtrace: ▆ 1. └─biometryassist::resplot(dat.som, call = T) at test-resplot.R:82:5 [ FAIL 1 | WARN 4 | SKIP 117 | PASS 173 ] Deleting unused snapshots: • all-w2/example1autoplot.svg • all-w2/example1resplot.svg • all-w2/example2autoplot.svg • all-w2/example2resplot.svg • all-w2/example3autoplot.svg • all-w2/example3lmmautoplot.svg • all-w2/example3lmmresplot.svg • all-w2/example3resplot.svg • all-w2/example4autoplot.svg • all-w2/example4lmmautoplot.svg • all-w2/example4lmmresplot.svg • all-w2/example4resplot.svg • all-w2/example5lmmautoplot1.svg • all-w2/example5lmmautoplot2.svg • all-w2/example5lmmresplot.svg • all-w2/example6lmmautoplot2.svg • all-w2/example6lmmresplot.svg • all-w2/example6variogram.svg • all-w2/example7lmmautoplot.svg • all-w2/example7lmmresplot.svg • all-w2/example7variogram.svg • all-w2/exercise10autoplot.svg • all-w2/exercise10resplot.svg • all-w2/exercise11autoplot1.svg • all-w2/exercise11autoplot2.svg • all-w2/exercise11resplot.svg • all-w2/exercise12autoplot.svg • all-w2/exercise12resplot.svg • all-w2/exercise13autoplot1.svg • all-w2/exercise13autoplot2.svg • all-w2/exercise13resplot.svg • all-w2/exercise14autoplot.svg • all-w2/exercise14resplot.svg • all-w2/exercise15autoplot1.svg • all-w2/exercise15autoplot2.svg • all-w2/exercise15autoplot3.svg • all-w2/exercise15resplot.svg • all-w2/exercise1autoplot.svg • all-w2/exercise1resplot.svg • all-w2/exercise2autoplot.svg • all-w2/exercise2resplot.svg • all-w2/exercise3autoplot.svg • all-w2/exercise3resplot.svg • all-w2/exercise4resplot.svg • all-w2/exercise5autoplot.svg • all-w2/exercise5resplot.svg • all-w2/exercise6autoplot.svg • all-w2/exercise6resplot.svg • all-w2/exercise7autoplot.svg • all-w2/exercise7resplot.svg • all-w2/exercise8resplot.svg • all-w2/exercise9autoplot.svg • all-w2/exercise9resplot.svg • des/crd-without-trt.svg • des/rcbd-without-trt.svg • design/3-way-factorial-with-names.svg • design/3-way-factorial.svg • design/3-way-rcbd-factorial-with-names.svg • design/column-buffers-rcbd.svg • design/column-buffers.svg • design/crd-color-blind-option1.svg • design/crd-color-blind-option2.svg • design/crd-color-blind-option3.svg • design/crd-color-blind-option4.svg • design/crd-color-blind-option5.svg • design/crd-colour-blind-option2.svg • design/crd-colour-blind-option3.svg • design/crd-colour-blind-option4.svg • design/crd-colour-blind-option5.svg • design/crd-colour-blind.svg • design/crd-paired-palatte.svg • design/crd-plot-produced.svg • design/crd-rdbu-palatte.svg • design/crd-set3-palatte.svg • design/double-column-buffers-rcbd.svg • design/double-column-buffers.svg • design/double-row-buffers-rcbd.svg • design/double-row-buffers.svg • design/edge-buffers-rcbd.svg • design/edge-buffers.svg • design/factorial-crd-plot-no-space-sep.svg • design/factorial-crd-with-names.svg • design/factorial-lsd-plot-with-sep.svg • design/factorial-rcbd-plot-produced.svg • design/lsd-plot-produced.svg • design/nested-lsd.svg • design/nse-of-column-names-with-blocks.svg • design/quoted-column-names-with-blocks.svg • design/rcbd-color-blind-option1.svg • design/rcbd-colour-blind-cividis.svg • design/rcbd-colour-blind-inferno.svg • design/rcbd-colour-blind-magma.svg • design/rcbd-colour-blind-option1.svg • design/rcbd-colour-blind-plasma.svg • design/rcbd-colour-blind-viridis.svg • design/rcbd-colour-blind.svg • design/rcbd-paired-palatte.svg • design/rcbd-plot-produced.svg • design/rcbd-rdbu-palatte.svg • design/rcbd-set3-palatte.svg • design/split-plot-produced.svg • design/split-plot-with-names.svg • design/split-plot-with-vector-names.svg • heatmap/heatmap-of-interpolated-grouped-data.svg • heatmap/heatmap-with-free-y.svg • heatmap/heatmap-with-geom-tile.svg • heatmap/heatmap-with-one-row.svg • heatmap/heatmap-with-red-green-palette.svg • mct/3-way-interaction-internal.svg • mct/3-way-interaction.svg • mct/aov-aliased-output.svg • mct/axis-and-label-rotation.svg • mct/axis-rotation.svg • mct/interactions-work.svg • mct/mct-descending-output.svg • mct/mct-inverse-output.svg • mct/mct-logit-output.svg • mct/mct-output-2se.svg • mct/mct-power-output.svg • mct/mct-sqrt-output.svg • mct/rotation-and-axis-rotation.svg • mct/rotation-and-label-rotation.svg • mct/rotation-with-hjust-and-vjust.svg • resplot/artool-resplot-with-call.svg • resplot/resplot-for-asreml-pt-1.svg • resplot/resplot-for-asreml-pt-2.svg • resplot/resplot-for-asreml-pt-3.svg • resplot/resplot-for-asreml-single.svg • resplot/resplot-for-sommer.svg • resplot/resplot-with-smaller-call.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.1
Check: package dependencies
Result: NOTE Packages which this enhances but not available for checking: 'asreml', 'ARTool' Flavor: r-release-linux-x86_64

Version: 1.2.1
Check: package dependencies
Result: NOTE Package which this enhances but not available for checking: ‘asreml’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64