CRAN Package Check Results for Maintainer ‘David Benkeser <benkeser at emory.edu>’

Last updated on 2025-12-04 07:51:31 CET.

Package	ERROR	NOTE	OK
drord			13
drtmle			13
nlpred	2	11

Package drord

Current CRAN status: OK: 13

Package drtmle

Current CRAN status: OK: 13

Package nlpred

Current CRAN status: ERROR: 2, NOTE: 11

Version: 1.0.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘David Benkeser <benkeser@emory.edu>’ Found the following URLs which should use \doi (with the DOI name only): File ‘wine.Rd’: https://doi.org/10.1016/j.dss.2009.05.016 Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: Rd files
Result: NOTE checkRd: (-1) dot-make_long_data.Rd:44: Lost braces; missing escapes or markup? 44 | training sample), psi (the value of this observations Psihat(P_{n,B_n}^0)), | ^ checkRd: (-1) dot-make_long_data_nested_cv.Rd:49: Lost braces; missing escapes or markup? 49 | training sample), psi (the value of this observations Psihat(P_{n,B_n}^0)), | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘nlpred-Ex.R’ failed The error most likely occurred in: > ### Name: xgboost_wrapper > ### Title: Wrapper for fitting eXtreme gradient boosting via 'xgboost' > ### Aliases: xgboost_wrapper > > ### ** Examples > > # simulate data > # make list of training data > train_X <- data.frame(x1 = runif(50)) > train_Y <- rbinom(50, 1, plogis(train_X$x1)) > train <- list(Y = train_Y, X = train_X) > # make list of test data > test_X <- data.frame(x1 = runif(50)) > test_Y <- rbinom(50, 1, plogis(train_X$x1)) > test <- list(Y = test_Y, X = test_X) > # fit xgboost > xgb_wrap <- xgboost_wrapper(train = train, test = test) Warning in throw_err_or_depr_msg("Parameter(s) have been removed from this function: ", : Parameter(s) have been removed from this function: params, save_period. This warning will become an error in a future version. Warning in throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), : Passed unrecognized parameters: verbose. This warning will become an error in a future version. Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", : Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version. Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", : Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version. Error in xgboost::xgboost(data = xgmat, objective = "binary:logistic", : argument "y" is missing, with no default Calls: xgboost_wrapper ... <Anonymous> -> process.y.margin.and.objective -> NROW Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [21s/96s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(nlpred) Loading required package: data.table > > test_check("nlpred") Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Saving _problems/testWrappers-13.R [ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('testWrappers.R:12:3'): wrappers work ──────────────────────────────── <getvarError/missingArgError/error/condition> Error in `xgboost::xgboost(data = xgmat, objective = "binary:logistic", nrounds = ntrees, max_depth = max_depth, min_child_weight = minobspernode, eta = shrinkage, verbose = verbose, nthread = nthread, params = params, save_period = save_period)`: argument "y" is missing, with no default Backtrace: ▆ 1. └─nlpred (local) check_wrapper(paste0(wrap, "_wrapper"), test = test, train = train) at testWrappers.R:31:17 2. ├─base::do.call(wrapper, args = list(train = train, test = test)) at testWrappers.R:12:17 3. └─nlpred::xgboost_wrapper(train = `<list>`, test = `<list>`) 4. └─xgboost::xgboost(...) 5. └─xgboost:::process.y.margin.and.objective(...) 6. └─base::NROW(y) [ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [22s/99s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(nlpred) Loading required package: data.table > > test_check("nlpred") Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 | Multistart 1 of 1 / Multistart 1 of 1 | Multistart 1 of 1 | Saving _problems/testWrappers-13.R [ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('testWrappers.R:12:3'): wrappers work ──────────────────────────────── <getvarError/missingArgError/error/condition> Error in `xgboost::xgboost(data = xgmat, objective = "binary:logistic", nrounds = ntrees, max_depth = max_depth, min_child_weight = minobspernode, eta = shrinkage, verbose = verbose, nthread = nthread, params = params, save_period = save_period)`: argument "y" is missing, with no default Backtrace: ▆ 1. └─nlpred (local) check_wrapper(paste0(wrap, "_wrapper"), test = test, train = train) at testWrappers.R:31:17 2. ├─base::do.call(wrapper, args = list(train = train, test = test)) at testWrappers.R:12:17 3. └─nlpred::xgboost_wrapper(train = `<named list>`, test = `<named list>`) 4. └─xgboost::xgboost(...) 5. └─xgboost:::process.y.margin.and.objective(...) 6. └─base::NROW(y) [ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc