CRAN Package Check Results for Maintainer ‘Benjamin Hofner <benjamin.hofner at pei.de>’

Last updated on 2025-12-28 01:49:04 CET.

Package	ERROR	NOTE	OK
gamboostLSS	4		9
papeR			13
stabs		13

Package gamboostLSS

Current CRAN status: ERROR: 4, OK: 9

Additional issues

M1mac noSuggests

Version: 2.1-0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave Loading required package: R2BayesX Installing package into '/home/hornik/tmp/scratch/RtmpccXeKq/RLIBS_3be6b869910b03' (as 'lib' is unspecified) also installing the dependency 'BayesXsrc' trying URL 'http://cran.at.r-project.org/src/contrib/BayesXsrc_3.0-6.tar.gz' trying URL 'http://cran.at.r-project.org/src/contrib/R2BayesX_1.1-6.tar.gz' Warning: SystemRequirements specified C++14: support will be removed soon * installing *source* package ‘BayesXsrc’ ... ** this is package ‘BayesXsrc’ version ‘3.0-6’ ** package ‘BayesXsrc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZWBTT8/R.INSTALL3d954837dee924/BayesXsrc/src' `"/home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/R" CMD config CXX14` -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayesxsrc/andrea/baseline.cpp -o bayesxsrc/andrea/baseline.o 'config' variable 'CXX14' is defunct /bin/bash: line 1: -std=gnu++17: command not found make[1]: *** [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:209: bayesxsrc/andrea/baseline.o] Error 127 make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZWBTT8/R.INSTALL3d954837dee924/BayesXsrc/src' ERROR: compilation failed for package ‘BayesXsrc’ * removing ‘/home/hornik/tmp/scratch/RtmpccXeKq/RLIBS_3be6b869910b03/BayesXsrc’ ERROR: dependencies ‘BayesXsrc’, ‘mgcv’ are not available for package ‘R2BayesX’ Perhaps try a variation of: install.packages(c('BayesXsrc', 'mgcv')) * removing ‘/home/hornik/tmp/scratch/RtmpccXeKq/RLIBS_3be6b869910b03/R2BayesX’ The downloaded source packages are in '/home/hornik/tmp/scratch/RtmpLuoyF6/downloaded_packages' Loading required package: gamboostLSS Loading required package: mboost Loading required package: parallel Loading required package: stabs Attaching package: 'gamboostLSS' The following object is masked from 'package:stats': model.weights Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics: chunk 11 (label = india_stunting1) Error in library("R2BayesX") : there is no package called 'R2BayesX' --- failed re-building 'gamboostLSS_Tutorial.Rnw' SUMMARY: processing the following file failed: 'gamboostLSS_Tutorial.Rnw' Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.1-0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave Loading required package: R2BayesX Installing package into '/tmp/Rtmp7Lna8X/RLIBS_1b6525780eba0f' (as 'lib' is unspecified) also installing the dependency 'BayesXsrc' trying URL 'http://cran.at.r-project.org/src/contrib/BayesXsrc_3.0-6.tar.gz' trying URL 'http://cran.at.r-project.org/src/contrib/R2BayesX_1.1-6.tar.gz' Warning: SystemRequirements specified C++14: support has been removed * installing *source* package ‘BayesXsrc’ ... ** this is package ‘BayesXsrc’ version ‘3.0-6’ ** package ‘BayesXsrc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/tmp/RtmpvmsBr8/R.INSTALL20dc4a481864ed/BayesXsrc/src' `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/andrea/baseline.cpp -o bayesxsrc/andrea/baseline.o 'config' variable 'CXX14' is defunct 'config' variable 'CXX14STD' is defunct /bin/bash: line 1: -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include: No such file or directory make[1]: *** [/home/hornik/tmp/R.check/r-devel-gcc/Work/build/etc/Makeconf:201: bayesxsrc/andrea/baseline.o] Error 127 make[1]: Leaving directory '/tmp/RtmpvmsBr8/R.INSTALL20dc4a481864ed/BayesXsrc/src' ERROR: compilation failed for package ‘BayesXsrc’ * removing ‘/tmp/Rtmp7Lna8X/RLIBS_1b6525780eba0f/BayesXsrc’ ERROR: dependencies ‘BayesXsrc’, ‘mgcv’ are not available for package ‘R2BayesX’ Perhaps try a variation of: install.packages(c('BayesXsrc', 'mgcv')) * removing ‘/tmp/Rtmp7Lna8X/RLIBS_1b6525780eba0f/R2BayesX’ The downloaded source packages are in '/tmp/Rtmp06gNb3/downloaded_packages' Loading required package: gamboostLSS Loading required package: mboost Loading required package: parallel Loading required package: stabs Attaching package: 'gamboostLSS' The following object is masked from 'package:stats': model.weights Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics: chunk 11 (label = india_stunting1) Error in library("R2BayesX") : there is no package called 'R2BayesX' --- failed re-building 'gamboostLSS_Tutorial.Rnw' SUMMARY: processing the following file failed: 'gamboostLSS_Tutorial.Rnw' Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.1-0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave Loading required package: R2BayesX Installing package into '/tmp/Rtmpc3K7S9/RLIBS_3dca125c5380a5' (as 'lib' is unspecified) also installing the dependency 'BayesXsrc' trying URL 'http://cran.at.r-project.org/src/contrib/BayesXsrc_3.0-6.tar.gz' trying URL 'http://cran.at.r-project.org/src/contrib/R2BayesX_1.1-6.tar.gz' Warning: SystemRequirements specified C++14: support has been removed * installing *source* package ‘BayesXsrc’ ... ** this is package ‘BayesXsrc’ version ‘3.0-6’ ** package ‘BayesXsrc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/tmp/Rtmpc3K7S9/working_dir/Rtmpf7hAUW/R.INSTALL3ee2ae1f9ef33b/BayesXsrc/src' `"/data/gannet/ripley/R/R-clang/bin/R" CMD config CXX14` `"/data/gannet/ripley/R/R-clang/bin/R" CMD config CXX14STD` -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/data/gannet/ripley/R/R-clang/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/andrea/baseline.cpp -o bayesxsrc/andrea/baseline.o 'config' variable 'CXX14' is defunct 'config' variable 'CXX14STD' is defunct 'config' variable 'CXX14FLAGS' is defunct /bin/sh: line 1: -I/data/gannet/ripley/R/R-clang/include: No such file or directory make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: bayesxsrc/andrea/baseline.o] Error 127 make[1]: Leaving directory '/tmp/Rtmpc3K7S9/working_dir/Rtmpf7hAUW/R.INSTALL3ee2ae1f9ef33b/BayesXsrc/src' ERROR: compilation failed for package ‘BayesXsrc’ * removing ‘/tmp/Rtmpc3K7S9/RLIBS_3dca125c5380a5/BayesXsrc’ ERROR: dependencies ‘BayesXsrc’, ‘mgcv’ are not available for package ‘R2BayesX’ Perhaps try a variation of: install.packages(c('BayesXsrc', 'mgcv')) * removing ‘/tmp/Rtmpc3K7S9/RLIBS_3dca125c5380a5/R2BayesX’ The downloaded source packages are in '/tmp/Rtmpc3K7S9/working_dir/RtmpQrVtSB/downloaded_packages' Loading required package: gamboostLSS Loading required package: mboost Loading required package: parallel Loading required package: stabs Attaching package: 'gamboostLSS' The following object is masked from 'package:stats': model.weights Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics: chunk 11 (label = india_stunting1) Error in library("R2BayesX") : there is no package called 'R2BayesX' --- failed re-building 'gamboostLSS_Tutorial.Rnw' SUMMARY: processing the following file failed: 'gamboostLSS_Tutorial.Rnw' Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.1-0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave Loading required package: R2BayesX Installing package into '/data/gannet/ripley/R/packages/tests-devel/gamboostLSS.Rcheck' (as 'lib' is unspecified) also installing the dependency 'BayesXsrc' trying URL 'http://cran.at.r-project.org/src/contrib/BayesXsrc_3.0-6.tar.gz' trying URL 'http://cran.at.r-project.org/src/contrib/R2BayesX_1.1-6.tar.gz' Warning: SystemRequirements specified C++14: support has been removed * installing *source* package ‘BayesXsrc’ ... ** this is package ‘BayesXsrc’ version ‘3.0-6’ ** package ‘BayesXsrc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/tmp/RtmpEg1jyd/working_dir/Rtmp4PKqRi/R.INSTALL3d06fc7c1d1771/BayesXsrc/src' `"/data/gannet/ripley/R/R-devel/bin/R" CMD config CXX14` `"/data/gannet/ripley/R/R-devel/bin/R" CMD config CXX14STD` -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/data/gannet/ripley/R/R-devel/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/andrea/baseline.cpp -o bayesxsrc/andrea/baseline.o 'config' variable 'CXX14' is defunct 'config' variable 'CXX14STD' is defunct 'config' variable 'CXX14FLAGS' is defunct /bin/sh: line 1: -I/data/gannet/ripley/R/R-devel/include: No such file or directory make[1]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:201: bayesxsrc/andrea/baseline.o] Error 127 make[1]: Leaving directory '/tmp/RtmpEg1jyd/working_dir/Rtmp4PKqRi/R.INSTALL3d06fc7c1d1771/BayesXsrc/src' ERROR: compilation failed for package ‘BayesXsrc’ * removing ‘/data/gannet/ripley/R/packages/tests-devel/gamboostLSS.Rcheck/BayesXsrc’ ERROR: dependency ‘BayesXsrc’ is not available for package ‘R2BayesX’ Perhaps try a variation of: install.packages('BayesXsrc') * removing ‘/data/gannet/ripley/R/packages/tests-devel/gamboostLSS.Rcheck/R2BayesX’ The downloaded source packages are in '/tmp/RtmpEg1jyd/working_dir/Rtmp8CtXCN/downloaded_packages' Loading required package: gamboostLSS Loading required package: mboost Loading required package: parallel Loading required package: stabs Attaching package: 'gamboostLSS' The following object is masked from 'package:stats': model.weights Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics: chunk 11 (label = india_stunting1) Error in library("R2BayesX") : there is no package called 'R2BayesX' --- failed re-building 'gamboostLSS_Tutorial.Rnw' SUMMARY: processing the following file failed: 'gamboostLSS_Tutorial.Rnw' Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Package papeR

Current CRAN status: OK: 13

Package stabs

Current CRAN status: NOTE: 13

Version: 0.6-4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Benjamin Hofner <benjamin.hofner@pei.de>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.6-4
Check: Rd files
Result: NOTE checkRd: (-1) stabsel_parameters.Rd:42: Lost braces 42 | always use code{"none"}.} | ^ checkRd: (-1) stabsel_stabsel.Rd:25: Lost braces 25 | always use code{"none"}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.6-4
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64