CRAN Package Check Results for Maintainer ‘Bangyou Zheng <bangyou.zheng at csiro.au>’

Last updated on 2025-12-28 03:51:57 CET.

Package	ERROR	NOTE	OK
BWGS		13
expDB			13
rapsimng			13
rtiddlywiki	1		12
taskqueue			13
weaana			13

Package BWGS

Current CRAN status: NOTE: 13

Version: 0.2.1
Check: Rd files
Result: NOTE checkRd: (-1) bwgs.cv.Rd:27: Lost braces; missing escapes or markup? 27 | \item{geno}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded {-1, 0, 1}. Missing data are allowed and coded as NA.} | ^ checkRd: (-1) bwgs.cv.Rd:59: Lost braces; missing escapes or markup? 59 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.} | ^ checkRd: (-1) bwgs.predict.Rd:25: Lost braces; missing escapes or markup? 25 | \item{geno_train}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA.} | ^ checkRd: (-1) bwgs.predict.Rd:29: Lost braces; missing escapes or markup? 29 | \item{geno_target}{Matrix (z x m) of genotypes for the target population: z lines with the same m markers as in geno_train. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA. Other arguments are identical to those of bwgs.cv, except pop_reduct_method, nTimes and nFolds, since the prediction is run only once, using the whole training population for model estimation, then applied to the target population.} | ^ checkRd: (-1) bwgs.predict.Rd:49: Lost braces; missing escapes or markup? 49 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package expDB

Current CRAN status: OK: 13

Package rapsimng

Current CRAN status: OK: 13

Package rtiddlywiki

Current CRAN status: ERROR: 1, OK: 12

Version: 0.5.2
Check: tests
Result: ERROR Running 'testthat.R' [9s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(rtiddlywiki) > test_check("rtiddlywiki") Starting test tiddlywiki server... Error in httr2::req_perform(httr2::req_error(req, is_error = function(resp) FALSE)) : Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Could not connect to server [127.0.0.1]: Failed to connect to 127.0.0.1 port 9090 after 2047 ms: Could not connect to server Saving _problems/test-word-17.R Saving _problems/test-word-18.R [ FAIL 2 | WARN 1 | SKIP 21 | PASS 81 ] ══ Skipped tests (21) ══════════════════════════════════════════════════════════ • !is_test_tw() is TRUE (1): 'test-tiddler.R:2:5' • On CRAN (20): 'test-rmarkdown.R:97:5', 'test-rmarkdown.R:115:5', 'test-rmarkdown.R:132:5', 'test-rmarkdown.R:149:5', 'test-rmarkdown.R:169:5', 'test-rmarkdown.R:186:5', 'test-rmarkdown.R:201:5', 'test-rmarkdown.R:217:5', 'test-rmarkdown.R:236:5', 'test-rmarkdown.R:253:5', 'test-rmarkdown.R:268:5', 'test-rmarkdown.R:283:5', 'test-rmarkdown.R:302:5', 'test-rmarkdown.R:327:5', 'test-rmarkdown.R:349:5', 'test-rmarkdown.R:371:5', 'test-rmarkdown.R:394:5', 'test-rmarkdown.R:416:5', 'test-rmarkdown.R:440:5', 'test-rmarkdown.R:474:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-word.R:17:5'): Word to Markdown conversion without embedding images works ── Expected `word_to_md(...)` not to throw any errors. Actually got a <simpleError> with message: Cannot find image fe36a2233fa96369704418cd1a62408d79da2ed1.png ── Error ('test-word.R:18:5'): Word to Markdown conversion without embedding images works ── Error in `file(con, "r")`: cannot open the connection Backtrace: ▆ 1. └─base::readLines(output_file) at test-word.R:18:5 2. └─base::file(con, "r") [ FAIL 2 | WARN 1 | SKIP 21 | PASS 81 ] Error: ! Test failures. Stopping test widdlywiki server... Cleanup tempory test folderExecution halted Flavor: r-oldrel-windows-x86_64

Package taskqueue

Current CRAN status: OK: 13

Package weaana

Current CRAN status: OK: 13