Last updated on 2025-12-28 05:50:18 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| getRad | 13 | ||
| move | 9 | 2 | 2 |
| move2 | 13 | ||
| moveWindSpeed | 13 | ||
| starsTileServer | 13 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 9, NOTE: 2, OK: 2
Version: 4.2.6
Check: tests
Result: ERROR
Running ‘test-all.R’ [69s/82s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Saving _problems/test.emd-96.R
Saving _problems/test.emd-152.R
Saving _problems/test.emd-185.R
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 16:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 680
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (18): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.move.R:52:3',
'test.web.R:13:3', 'test.web.R:33:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.emd.R:96:3'): emd th complex ───────────────────────────────────
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ──
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ───
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 4.2.6
Check: tests
Result: ERROR
Running ‘test-all.R’ [42s/45s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Saving _problems/test.emd-96.R
Saving _problems/test.emd-152.R
Saving _problems/test.emd-185.R
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 16:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 680
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
[ FAIL 3 | WARN 12 | SKIP 22 | PASS 404 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (18): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.move.R:52:3',
'test.web.R:13:3', 'test.web.R:33:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.emd.R:96:3'): emd th complex ───────────────────────────────────
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ──
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ───
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
[ FAIL 3 | WARN 12 | SKIP 22 | PASS 404 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 4.2.6
Check: tests
Result: ERROR
Running ‘test-all.R’ [85s/86s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Saving _problems/test.emd-96.R
Saving _problems/test.emd-152.R
Saving _problems/test.emd-185.R
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 15:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 18:00:01" "2009-02-10 18:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 18:00:01" "2009-02-10 18:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 680
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (18): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.move.R:52:3',
'test.web.R:13:3', 'test.web.R:33:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.emd.R:96:3'): emd th complex ───────────────────────────────────
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ──
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ───
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 4.2.6
Check: tests
Result: ERROR
Running ‘test-all.R’ [66s/67s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Saving _problems/test.emd-96.R
Saving _problems/test.emd-152.R
Saving _problems/test.emd-185.R
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 15:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 18:00:01" "2009-02-10 18:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 18:00:01" "2009-02-10 18:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 680
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (18): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.move.R:52:3',
'test.web.R:13:3', 'test.web.R:33:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.emd.R:96:3'): emd th complex ───────────────────────────────────
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ──
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ───
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 4.2.6
Check: tests
Result: ERROR
Running 'test-all.R' [58s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Saving _problems/test.emd-96.R
Saving _problems/test.emd-152.R
Saving _problems/test.emd-185.R
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 16:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 680
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (17): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.web.R:13:3', 'test.web.R:33:3'
• On Windows (1): 'test.move.R:51:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.emd.R:96:3'): emd th complex ───────────────────────────────────
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ──
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ───
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 4.2.6
Check: tests
Result: ERROR
Running ‘test-all.R’ [68s/80s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Saving _problems/test.emd-96.R
Saving _problems/test.emd-152.R
Saving _problems/test.emd-185.R
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 16:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 680
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (18): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.move.R:52:3',
'test.web.R:13:3', 'test.web.R:33:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.emd.R:96:3'): emd th complex ───────────────────────────────────
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ──
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ───
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 4.2.6
Check: tests
Result: ERROR
Running ‘test-all.R’ [65s/79s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Saving _problems/test.emd-96.R
Saving _problems/test.emd-152.R
Saving _problems/test.emd-185.R
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 16:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 680
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (18): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.move.R:52:3',
'test.web.R:13:3', 'test.web.R:33:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.emd.R:96:3'): emd th complex ───────────────────────────────────
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(target, current, ...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ──
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(target, current, ...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ───
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(target, current, ...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 4.2.6
Check: tests
Result: ERROR
Running 'test-all.R' [58s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Saving _problems/test.emd-96.R
Saving _problems/test.emd-152.R
Saving _problems/test.emd-185.R
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 16:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 680
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (17): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.web.R:13:3', 'test.web.R:33:3'
• On Windows (1): 'test.move.R:51:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.emd.R:96:3'): emd th complex ───────────────────────────────────
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(target, current, ...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ──
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(target, current, ...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ───
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(target, current, ...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 4.2.6
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
R 2.0Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 4.2.6
Check: tests
Result: ERROR
Running 'test-all.R' [81s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Saving _problems/test.emd-96.R
Saving _problems/test.emd-152.R
Saving _problems/test.emd-185.R
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 16:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 680
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (17): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.web.R:13:3', 'test.web.R:33:3'
• On Windows (1): 'test.move.R:51:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.emd.R:96:3'): emd th complex ───────────────────────────────────
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(target, current, ...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ──
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(target, current, ...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ───
Error in `target != current`: comparison of these types is not implemented
Backtrace:
▆
1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.default(act$val, exp$val, ...)
4. ├─base::all.equal(x, y, ...)
5. └─base::all.equal.default(x, y, ...)
6. └─base::all.equal.numeric(target, current, ...)
7. └─base::attr.all.equal(...)
8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes)
[ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
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