CRAN Package Check Results for Maintainer ‘Adrien Taudière <adrien.taudiere at zaclys.net>’

Last updated on 2025-04-12 22:52:30 CEST.

Package	ERROR	NOTE	OK
MiscMetabar	5	1	9

Package MiscMetabar

Current CRAN status: ERROR: 5, NOTE: 1, OK: 9

Version: 0.14.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [18s/20s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(MiscMetabar) Loading required package: phyloseq Loading required package: ggplot2 Loading required package: dada2 Loading required package: Rcpp Loading required package: dplyr Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: purrr Attaching package: 'purrr' The following object is masked from 'package:testthat': is_null > > test_check("MiscMetabar") Starting 2 test processes Error in `private$handle_error()`: ! testthat subprocess failed to start, stderr: Loading required package: phyloseq Error: package or namespace load failed for 'phyloseq' in ans[ypos] <- rep(yes, length.out = len)[ypos]: Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'logical' Error: package 'phyloseq' could not be loaded Caused by error: ! R session crashed with exit code 1 Backtrace: ▆ 1. └─testthat::test_check("MiscMetabar") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_parallel(...) 5. ├─withr::with_dir(...) 6. │ └─base::force(code) 7. ├─testthat::with_reporter(...) 8. │ └─base::tryCatch(...) 9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".") 13. └─queue$poll(Inf) 14. └─base::lapply(...) 15. └─testthat (local) FUN(X[[i]], ...) 16. └─private$handle_error(msg, i) 17. └─rlang::abort(...) Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.14.2
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [20s/18s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(MiscMetabar) Loading required package: phyloseq Loading required package: ggplot2 Loading required package: dada2 Loading required package: Rcpp Loading required package: dplyr Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: purrr Attaching package: 'purrr' The following object is masked from 'package:testthat': is_null > > test_check("MiscMetabar") Starting 2 test processes Error in `private$handle_error()`: ! testthat subprocess failed to start, stderr: Loading required package: phyloseq Error: package or namespace load failed for 'phyloseq' in ans[ypos] <- rep(yes, length.out = len)[ypos]: Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'logical' Error: package 'phyloseq' could not be loaded Caused by error: ! R session crashed with exit code 1 Backtrace: ▆ 1. └─testthat::test_check("MiscMetabar") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_parallel(...) 5. ├─withr::with_dir(...) 6. │ └─base::force(code) 7. ├─testthat::with_reporter(...) 8. │ └─base::tryCatch(...) 9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".") 13. └─queue$poll(Inf) 14. └─base::lapply(...) 15. └─testthat (local) FUN(X[[i]], ...) 16. └─private$handle_error(msg, i) 17. └─rlang::abort(...) Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.14.2
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [35s/31s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(MiscMetabar) Loading required package: phyloseq Loading required package: ggplot2 Loading required package: dada2 Loading required package: Rcpp Loading required package: dplyr Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: purrr Attaching package: 'purrr' The following object is masked from 'package:testthat': is_null > > test_check("MiscMetabar") Starting 2 test processes Error in `private$handle_error()`: ! testthat subprocess failed to start, stderr: Loading required package: phyloseq Error: package or namespace load failed for 'phyloseq' in ans[ypos] <- rep(yes, length.out = len)[ypos]: Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'integer' Error: package 'phyloseq' could not be loaded Caused by error: ! R session crashed with exit code 1 Backtrace: ▆ 1. └─testthat::test_check("MiscMetabar") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_parallel(...) 5. ├─withr::with_dir(...) 6. │ └─base::force(code) 7. ├─testthat::with_reporter(...) 8. │ └─base::tryCatch(...) 9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".") 13. └─queue$poll(Inf) 14. └─base::lapply(...) 15. └─testthat (local) FUN(X[[i]], ...) 16. └─private$handle_error(msg, i) 17. └─rlang::abort(...) Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.14.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ANCOMBC', 'mia' Flavor: r-release-macos-x86_64

Version: 0.14.2
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘ANCOMBC’ Flavor: r-release-macos-x86_64

Version: 0.14.2
Check: package dependencies
Result: ERROR Package required but not available: ‘dada2’ Packages suggested but not available for checking: 'ANCOMBC', 'mia' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64