4b517b4c15926c725ad7037a29547c68 *DESCRIPTION
029f365531d3a3867698fc38219c719c *NAMESPACE
b3e820a19ed3a216ce68e104fffe235e *NEWS.md
c6b02753cad5dc9e369bdd2adfa72081 *R/RcppExports.R
5d692d6348f6ebb00fba34b9e14e1f41 *R/rspr.R
2ead4c5fe8d9c765f1627c6187c62168 *R/uspr.R
a6f0b714ce93cdadbd05f1cc6581cd68 *R/zzz.R
5efad051a13b6f8a46fa96eadf730ac9 *build/partial.rdb
89b5cc7cd617019af710deb3a73b8073 *build/vignette.rds
cdb18e6063c04948ae2b8d184fa2b2da *inst/CITATION
3acbda7eb6beee3ed737196712770e49 *inst/WORDLIST
1f33bfc4d83cd40bdb2a225c9aac8be2 *inst/doc/TBRDist.R
94843e97fda575d67445ffe18842a806 *inst/doc/TBRDist.Rmd
103ddbc4ec7b08c3a0f4fb2d7b476931 *inst/doc/TBRDist.html
3baa11b56a7af27dc9a277661dedb236 *man/RSPRDist.Rd
8e8920d0444a5698afe5c6432c670c0e *man/TreeRearrangementDistances.Rd
85a77c035c055fe4d7ce534902c97527 *man/dot-CheckRooted.Rd
97a79c928edc8c140c06f388126e851b *man/dot-PrepareTrees.Rd
9b2030221330a774cfcf130686c56bee *man/internals.Rd
ea0827e2343fcae63349c1d33eaede56 *man/rspr_dist.Rd
39c9cdb8db6016a98923417548cd1e0f *src/RcppExports.cpp
2d5337cbe086b184c261cec20999a566 *src/rspr.cpp
98deb1a3f498e081328a389dd9b6184d *src/rspr/ClusterForest.h
04f072e0754a47917574e8edc0895462 *src/rspr/ClusterInstance.h
27ec44cd8ea5a8bb796412dad8309245 *src/rspr/Forest.h
622acd4b9fc064e0820676de0b8e887f *src/rspr/LCA.h
c9431ca14b86196109980b561f54acf9 *src/rspr/Makefile
4626757489d9696d85845844c1ca341c *src/rspr/Node.h
63f4cac4b4f19672b8fefe0c2378699d *src/rspr/R/rspR.r
72ad2c6b4b98e89288179c0754b3bb35 *src/rspr/R/rspR_examples.r
477a6a0293ee6b5cbf02031ceb035a05 *src/rspr/README.txt
9b7140ec6357eea6ec41091d69978152 *src/rspr/README_spr_supertrees.txt
f8eaaf6f19a0321472cc531aaf6b11d6 *src/rspr/SiblingPair.h
47c494899e839ec1418af4c6acc1ee44 *src/rspr/UndoMachine.h
ba1df4ae2c904a6ddb5b9098b8dcf1af *src/rspr/fill_matrix.cpp
ea42e0cd2ca3a6405fc8aa40cedad5d3 *src/rspr/gen_rooted_trees.pl
3c34afdc3adf82d2448f12715a255122 *src/rspr/gpl.txt
ec1acddfb6050ae9b5ca14bbf6b2b5ae *src/rspr/hybridization.h
41694154ff0dd79a8612d19ef1b1c0ae *src/rspr/lgt.h
c18ffc00e1a1d78bec01def18d67a63f *src/rspr/multi_test.sh
2458ed0824830b161f97e66fed9c62f8 *src/rspr/node_glom.h
a91b44d89430ce5f02513971b1712dcf *src/rspr/rspr.cpp
69eff2161c08a30deda1e929b3f16ad8 *src/rspr/rspr.h
826cbcab6b89ff885db65abefbf5f05b *src/rspr/sparse_counts.h
ebd60caec69e616f0e71484ddd2de2e7 *src/rspr/spr_supertree.cpp
60e2c390228b09f1bceab0aa3a620985 *src/rspr/test_initial_super_trees/multi_supertree_7.1_test_00.txt
010419f81219a69520f5871cd74e419c *src/rspr/test_initial_super_trees/multi_supertree_7.1_test_00_1.txt
d470bf91138c46882c35672236e64cda *src/rspr/test_initial_super_trees/multi_supertree_7.1_test_00_2.txt
1020b09181d8b2b33ec4391473740c81 *src/rspr/test_trees/big_test
b3863d4480c4815352565454d64dd6ae *src/rspr/test_trees/big_test2
5686357b9022ec418d2a5ca050432d1d *src/rspr/test_trees/bigtest_mult.txt
ac5e0f0c05c6c13ecfb8a6d8d6c8f214 *src/rspr/test_trees/cluster_1.txt
52dd1775f8470b975fce5040d40fa820 *src/rspr/test_trees/cluster_10.txt
94fb5dd7348306b566ba84c78d1400c7 *src/rspr/test_trees/cluster_11.txt
2b1ec9fd28ace4714aad0072abf4b3ca *src/rspr/test_trees/cluster_12.txt
0ff31b7d352b4e4d5efe9c6434e100bd *src/rspr/test_trees/cluster_13.txt
0c7ba624033c046e62b95ed65085ece8 *src/rspr/test_trees/cluster_14.txt
d4940446315b208e44abb6a24fbcee22 *src/rspr/test_trees/cluster_15.txt
6355ea41f6a16a4f66c65a65c26720e4 *src/rspr/test_trees/cluster_16.txt
8d7a8da16ba35690fbe3c2f3c0dad243 *src/rspr/test_trees/cluster_17.txt
255a69a4ad6ad3595e26bb3a92dffcad *src/rspr/test_trees/cluster_18.txt
f524b5b92cf86acad4439e8a679bf0e3 *src/rspr/test_trees/cluster_19.txt
286ae9d2bfbdf1fc79c13ae832c1539b *src/rspr/test_trees/cluster_2.txt
1233c9c7efbf1f4f445d62a2686adccb *src/rspr/test_trees/cluster_3.txt
9f3b9404d2a011b23e621b7ccf49e0b7 *src/rspr/test_trees/cluster_4.txt
c5c30d2f7f1f2611764b1fca32977290 *src/rspr/test_trees/cluster_5.txt
6e5b53f6a78d3228b29b3be578139486 *src/rspr/test_trees/cluster_6.txt
32c917b8c2e09e02de1aa8d43eb5e43c *src/rspr/test_trees/cluster_7.txt
6a6f5754f6c32de60c695e37eede7ed4 *src/rspr/test_trees/cluster_8.txt
c3df48cfcb8806a42983eac2026b010f *src/rspr/test_trees/cluster_9.txt
5c88bdb7f1650ac8b35293e06557b5e2 *src/rspr/test_trees/cluster_a.txt
c3df48cfcb8806a42983eac2026b010f *src/rspr/test_trees/cluster_b.txt
5c88bdb7f1650ac8b35293e06557b5e2 *src/rspr/test_trees/cluster_c.txt
591df89fa48270f679285aa727f1896a *src/rspr/test_trees/cluster_d.txt
51e59268e0f9ca77f59205fc6df3ecf7 *src/rspr/test_trees/cluster_e.txt
8af5f66a7e6f700bc89fe4a35b574b35 *src/rspr/test_trees/cluster_f.txt
2828e088a33a5c0e63360ebd9bc757f3 *src/rspr/test_trees/cluster_test
9efacd99f10c124b5dbfd36407dc9392 *src/rspr/test_trees/mult_big_test
e7bbf777ae46dd7493982c498576b927 *src/rspr/test_trees/multi_cluster_test
83c54ca4cff19a478db0a5b0cd634faf *src/rspr/test_trees/multi_cluster_test_b.txt
fc10be09910d1ac82ab62b1a56d98e68 *src/rspr/test_trees/multi_tree_7.1_test_00.txt
e9bd6aa9ee2e1db9916b5319c03e46aa *src/rspr/test_trees/multi_tree_7.3_test_00.txt
924e9729415b69ee43e05a43998ba0db *src/rspr/test_trees/multi_tree_7.4_test_00.txt
9f4632d371d50fe711aa011997a53969 *src/rspr/test_trees/multi_tree_8.2_test_00.txt
5eded2614fc1eff6a1f59204bbbb3c93 *src/rspr/test_trees/multi_tree_8.4_test_00.txt
5eded2614fc1eff6a1f59204bbbb3c93 *src/rspr/test_trees/multi_tree_8.4_test_01.txt
8e5d99928f23605b4ca71bcbb509fa15 *src/rspr/test_trees/multi_tree_8.5_test_00.txt
82d298c9acd8d511ae822c83810e00d7 *src/rspr/test_trees/multi_tree_8.6_test_00.txt
cb796d0c3c02a8e0f3eac834117c9b1d *src/rspr/test_trees/multi_tree_8.7_test_00.txt
08572c8051901c5b7f9216cd5627e990 *src/rspr/test_trees/multi_tree_8.7_test_01.txt
9db906631e5d87655cafbc0a9f377d30 *src/rspr/test_trees/multi_tree_basic.txt
4ea260a33259dcae4a2636592b5fc56b *src/rspr/test_trees/multi_tree_basic_2.txt
75651a709114949fce2e93619190c427 *src/rspr/test_trees/multi_tree_basic_5.txt
837b7709a7b09651f2fee73a7921dbb2 *src/rspr/test_trees/multi_tree_test_00.txt
72fd4286cb55ec8ffcd09389753c0718 *src/rspr/test_trees/rand_mult_.txt
b61f2b0e48f9db14393d40b847c78f69 *src/rspr/test_trees/rand_mult_10.txt
8ca442c2070b6bb4388f32dd20a8e8ef *src/rspr/test_trees/rand_mult_15.txt
715862b00525fa8c86bd215b735cef32 *src/rspr/test_trees/rand_mult_xx.txt
83c54ca4cff19a478db0a5b0cd634faf *src/rspr/test_trees/rho_test.txt
46f5bc7465509edf8e67d66134ba5d96 *src/rspr/test_trees/rho_test2.txt
eb6b329d2a0c7757ec3542bef43cfd47 *src/rspr/test_trees/show_moves_test.txt
aa03e5f068c9a471e0eee5f44f8b8205 *src/rspr/test_trees/show_moves_test_1.txt
875406218da4995a4c884ffb79ae4dc9 *src/rspr/test_trees/show_moves_test_2.txt
08d1b449d762e496f72974e448ac4ef8 *src/rspr/test_trees/single_cut_test_00.txt
3811f90dbd0c9f6ac11e2bb16da47fe3 *src/rspr/test_trees/single_cut_test_01.txt
58b21084252fe25aba492a33403ed3ce *src/rspr/test_trees/trees2.txt
530be11acd3f1fbce3b5e41e6bd02d73 *src/rspr/test_trees/trees3.txt
5e074a49a5d971c62a503017ebd9bd2a *src/rspr/test_trees/trees4.txt
8fbb85a8e8adc6c7c7cb962f32b1d4b8 *src/rspr/test_trees/trees5.txt
e9e9f09579a3614b49ee39d9f073cd3f *src/rspr/test_trees/trees6.txt
6f90739287248561306b4f96af5417ea *src/rspr/test_trees/trees7.txt
1efa2791edc58cad2697d8ececd60253 *src/rspr/test_trees/trees_100_17.txt
397001ada567cd8e751f39f14e5a3570 *src/rspr/test_trees/trees_100_17_a.txt
b44bab8ab3726e3bff7513d8eadc073e *src/rspr/test_trees/trees_100_17_mult.txt
a76ade671922b2473722de57548a9e9f *src/rspr/test_trees/trees_100_24.txt
9030e5513335cda8e952fb65adb19178 *src/rspr/test_trees/trees_100_24_a.txt
3d99250486a0b4f0d55c36cfc742db74 *src/rspr/test_trees/trees_100_24_mult.txt
f190ac51f745e8f704818bbb417939e7 *src/rspr/test_trees/trees_100_9.txt
83dfced53266eb1b474ec1cb1ae8239c *src/rspr/test_trees/trees_100_9_a.txt
f03651be9c9bba628404c111e28bcc3d *src/rspr/test_trees/trees_a.txt
87b93ec58a0b3725f7dbe8b64dc5772b *src/rspr/tests/pairwise
7fa0ac734a80390a8428f8a0ce2e66d3 *src/spr/canonize7.h
73aa8c7f057bafbcab5d6ac4f80e1e4e *src/spr/canonize8.h
d0fbc672835bce96575d723f59df03b0 *src/spr/canonize9.h
47c02dafa5f94314300705a09769501f *src/spr/lookup.h
8d285d6166ba0cdf5953d07f081c3893 *src/spr/lookup7.h
5de5bf718c30ad4c79a3953eadef57ff *src/spr/lookup8.h
a368cf337b8b5d49357d4d2fd62b0f68 *src/spr/lookup9.h
b8038f73362085749a49df56f4068b8e *src/spr/utree_splits.h
e1e7059f67f0918a772716a102e3779d *src/spr_lookup.cpp
a8928837fb12a2fb0645546d589fddce *src/uspr.cpp
d8993e9fd7d5add7419b1e9c68d55121 *src/uspr/tbr.h
543188923f70b7fb58a68edf2646956a *src/uspr/tree_numbering.h
e9ba71060c726452e7422a7f09e8fa98 *src/uspr/uforest.h
00a0a7269ab0971f4b33fa1281b3ec8e *src/uspr/unode.h
fb30d71e30d7fa9a012b992ccec7cc05 *src/uspr/unode_arena.h
bd88d5f17990b4ae25477fde366b9133 *src/uspr/uspr.cpp
f772948b86e48873c24dcf29495666f8 *src/uspr/uspr.h
1de1f1ec7b7e687c03bc35360f2260f6 *src/uspr/uspr_neighbors.cpp
74a368b3c1adcef40aa7be4e219c2382 *src/uspr/uspr_neighbors.h
1bcaa506db833fd60b4e17847dc298cc *src/uspr/uspr_neighbors_numbered.h
0f51638e04218d8fd97706077ab22ebf *src/uspr/utree.h
718dbaefde81c13f46cb83c5edfdf3a6 *tests/testthat.R
d77056a50f5cb4d2e8ebc9c8f100ec7a *tests/testthat/test-rspr.R
17c16aaf9a816db7973257da5d7fa9ae *tests/testthat/test-src.R
37fcd999bab8ef0c539be18d3efd62c5 *tests/testthat/test-uspr.R
94843e97fda575d67445ffe18842a806 *vignettes/TBRDist.Rmd
