63b356453ebdbe5acf3e65c37b3a12f2 *DESCRIPTION
c1b1e110570a9ac29957f89ae7e89a2f *NAMESPACE
70f09703d94bd13d0bf8d55fbf02bf51 *NEWS.md
87ea152f070e45df119c0cdcd145eb0f *R/CIF1.CR.R
ee90daf33faefb0e6df592fa3b864610 *R/CIF1mv.CR.R
88cf3abed9a2c0f207bae3c5373b8638 *R/CIF1mv.SF.R
70aa46d82a389dabbe2c0d2769614dfb *R/CIF2.CR.R
6419714529283591ee2cd1682e9f5202 *R/CIF2mv.CR.R
17aefe56b73a7244845f3373bd897d9b *R/CindexCR.R
fb1ecf2a5bc45d9edb1511855f9cf546 *R/Concordance.JMMLSM.R
e77225106a4b800f3e2731b8833c0a50 *R/Concordance.R
d5e1d6b67cdaea8d90d70f87c0f55f04 *R/Concordance.jmcs.R
11a88c218d7b2a7198d5c4f8a0eaf1ad *R/Concordance.mvjmcs.R
29d500d682c4f23a8a8bd57c05930b87 *R/Diff.R
7deadfe332e88d13eb4b3f2156f176d2 *R/DiffSF.R
3ab5ae744a4cbf05e88dd529e94a893e *R/DynPredAcc.JMMLSM.R
e10caa35b5bbaac3bd65c6920048b06b *R/DynPredAcc.R
e5259db7f755fa59eca0bfb53226ea16 *R/DynPredAcc.jmcs.R
1b2a55f5baa30c3584ec2ef220d9b991 *R/DynPredAcc.mvjmcs.R
dceb437dedbee9049041a8ed679ba9ce *R/FastJM.R
a43d627f90c5d1046c2efc6286ba4cc9 *R/GetBayes.R
b481833ea470c4423a9c9f4b3d06be8d *R/GetE.R
ad43777a4e809588098aa3d7b3365560 *R/GetESF.R
01272b3074291e89d88a1abd0549bc26 *R/GetEmpiricalCIF.R
ad21fd0c463bfe6f6be26bde8dad5953 *R/GetGHmatrix.R
2ad340fb4698583508873040b8f9290c *R/GetVarSurvfit.R
9c1923f34ca5330efc52ef53261bf5ab *R/Getinit.R
74f8e18a3830c9d49739081d24b5cd88 *R/Getmvinit.R
bb7f2b30528b320151fba43203311478 *R/Getriskset.R
a94dbf34ad3700efc669dee643abe2c7 *R/JMMLSM.R
e2cb102f1e4bcb1a753566e4c2ef71a2 *R/JMMLSM_control.R
f92f33151e86f1d9eb9fbaa363c898b2 *R/P.us.R
a34641b4167bbcd15067ab9ee8da1952 *R/Pk.us.R
b2e704ebcf6c6549053a6190942c0ae8 *R/RcppExports.R
4b69131edca690a31deea8d90ad14d4f *R/coef.JMMLSM.R
f18f4b6acd6857e487427e72dacbe2d7 *R/coef.jmcs.R
a442da5d65f028f3a594cf29bda49a0d *R/coef.mvjmcs.R
3f8740a2996e1a05657bd4d975d59784 *R/combine_biomarkers.R
d0c10d93bade2fe45453b73d55210116 *R/data.R
3382d4a968c3c0bb187ba5120326c947 *R/estepMV_worker.R
4d7ca882dbb7410ec1dbe3a8e622d442 *R/estepMV_workerSF.R
faebb9d2061d5dc4ad0b4358e64c9133 *R/fitted.jmcs.R
688d77008cb78f1688e443acfcc338a3 *R/fixef.R
6b6a282b3796a4356e0161691b478fb1 *R/getLoglike.R
cba84555eb9bd676c3526c4a538be7e5 *R/getLoglikeSF.R
7e90e58b9503ee10f644fc8405cdf77c *R/getM.R
8f3c0d318493194e552dfc3c23ff6b75 *R/getMSF.R
f1705b33753570a515ddef9a9e61aa8f *R/getbSig.R
a193824f8a3efc4a541984a807603165 *R/getbSig_grad.R
d828023dabd15fbe67bf876df66f21ec *R/getbSig_gradSF.R
a862632078a737827147348e72901474 *R/getbsigSF.R
5790e04f93da63ba37a0c224aa697938 *R/getdummy.R
0aa7d9f07082c2200cf0f0a28e29079f *R/getmvLoglike.R
40733c41d437d734a809680ebdeb4661 *R/getmvdummy.R
d91fe4e3789548a763058639aef010be *R/jmcs.R
02ec0391c850238b65c33a6baa726601 *R/jmcs_control.R
c7bce6fcfdc7bf0bf967ab135ca87dfd *R/joint_neglog.R
d342cd24258cbf24bc7f7b3e64191246 *R/logLik.JMMLSM.R
93bb2485d6e6eb990c1fbfd6e09c0c8e *R/logLik.jmcs.R
39b6586fb21896827e8c51dc581593f7 *R/logLik.mvjmcs.R
af8b7ac32544d787732455376ff54885 *R/logLikCR.R
3c2f05a277bb5f7d80e9232855a72621 *R/logLikCRmv.R
48640db587a2a0aed0f2006a763272e4 *R/logLikSFmv.R
5622a54f650c0b439a9cefe5af6fd082 *R/mvdiff.R
dda3e41818a966251635954d19be72d7 *R/mvdiffSF.R
56c30c275571a914724ad14ee7d48a56 *R/mvjmcs.R
1bce929b54158b6fd9bdb0ac19f3e6f4 *R/mvjmcs_control.R
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382901a52e12c1a2600aa2da6e088b40 *R/plot.survfitJMMLSM.R
b9156ec8ab1ec42000ac02382282ced3 *R/plot.survfitjmcs.R
aa19fc70229aa9ad8659319a1cbf48dc *R/plot.survfitmvjmcs.R
a69b699095d4d04b0c0ed348d61778df *R/print.JMMLSM.R
57e311932dd22893ce5fab1a9ac6dcc1 *R/print.jmcs.R
8109983d52bfeee5fa995a416c03e7c5 *R/print.mvjmcs.R
d88672a83777ad0de55fa68a8acc58da *R/print.survfitJMMLSM.R
2cae728a30b83027510d433a8cb5eea6 *R/print.survfitjmcs.R
c48fc1cee2d7a3844374e616b54c211f *R/print.survfitmvjmcs.R
5212328f39949c1e7bc080bf82619ec2 *R/ranef.R
6a6f3fa1fc8bf9f861d8d1daa8cabe2d *R/residuals.jmcs.R
5b7908cd7c22feabdc317ddb268fb1cf *R/simJMWSVdata.R
f808bd5fb9f066b20b6a7c42f6c74379 *R/simJMdata.R
6fbeb5b391cbeeb7a720814037c9f4d8 *R/simmvJMdata.R
2f139e5b794b400eb34630b2b04db37f *R/simmvJMdatalm.R
9cd4ac49e0ef03f4bf85d668af551261 *R/sortdata.R
8148978044f36589295f31dc421092fb *R/sortmvdata.R
bd445068f38329f5b36aac29c2f24d07 *R/summary.Concordance.R
91551fd9e3f2fede288db244cdb35c3b *R/summary.DynPredAcc.R
f0d9d5cf94e523f61a1c1e001379bb0c *R/summary.JMMLSM.R
88b288ec04ad435d4a02d46e8d21eca7 *R/summary.jmcs.R
0a4cb66f3270e7edda382afed1db7e02 *R/summary.mvjmcs.R
3f9425219992247ec28e21b2a5115e53 *R/supporting_timeplot.R
8e3c8d7e65aaeffd603bb2eedf6ca0ff *R/survfitJM.JMMLSM.R
7bf14091d326700941f644e665063565 *R/survfitJM.R
a61ca47def3250128103617ba4b08909 *R/survfitJM.jmcs.R
8b8ede75a4cbe5569f3f5f58e7e58d2c *R/survfitJM.mvjmcs.R
c937e1472e89607484c6dd9969937a06 *R/survfitJMMLSM.R
b1aa69290874c03418b2f77ab6c7501f *R/survfitjmcs.R
865f570165015ec5d5beeb6daec6fd12 *R/survfitmvjmcs.R
9d1c02d4c58015b25090ed05c9a5aead *R/timeROC.R
71c0322186a2a960b5f59d773d69b29a *R/timeplot.R
ff002819aa147982bf68427d29245780 *R/vcov.JMMLSM.R
ec0653de00a42bf45bb6dae4d6399ab1 *R/vcov.jmcs.R
b17db2d3a27116f99526d89c2705d826 *R/vcov.mvjmcs.R
3d946d1a8fb456b0265526eb9589c89b *README.md
7167f54122618adddbbdd960996024f1 *data/cdata.rda
706c7b03313f1b72f0002e8fb4d42ab8 *data/cdatah.rda
f61ba7b44e91ffc4932f3af82a8c4406 *data/mvcdata.rda
0e555988da464faea6510f7d4847df10 *data/mvydata.rda
e886f9d7bbc2bf137fca3b2892d06ac6 *data/ydata.rda
e63ab09ced7e244ccecd7d944c1dc27c *data/ydatah.rda
759d2402280db88d3e51faedfa9ad2cf *inst/WORDLIST
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0be21565f66b847b8846df6b30027580 *man/DynPredAcc.Rd
2b10c146b0c7e52645d9c3242d46efe0 *man/JMMLSM.Rd
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81b9e2f3f38a714d2c6b7dcca8717a8b *man/combine_biomarkers.Rd
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a2e90c02c48bbc0b92f77d6a495445d3 *man/fitted.Rd
277cd74d048efa6aba371435a06a021a *man/fixef.Rd
ea8ceaf70dc1cc8845aef9dbd358e374 *man/jmcs.Rd
d22b4a1babd3238cfd53c3b7d41cc580 *man/jmcs_control.Rd
d711040e0ed9e71b198b9d869cb11c21 *man/logLik.Rd
373d3cc7763faae22bfb55e5798fd045 *man/mvcdata.Rd
e2a6857e6353c3d993af072e686382ae *man/mvjmcs.Rd
c702e6f77b9c51b2d79328ae519ffc59 *man/mvjmcs_control.Rd
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d02b20edc36e46e68b172b8a14d1139b *man/plot.jmcs.Rd
e324a609542724aee2c4ccfeff94a567 *man/plot.survfit.Rd
58c5b4f3f7c82512c8b0eacd646e2585 *man/print.Rd
551f62b65d78bd57ee7f98646386b128 *man/print.survfit.Rd
7753238aff3a633b3c668b1915cba51a *man/ranef.Rd
2d4d69452129be70d1cb0627387f74b8 *man/residuals.Rd
5b9b4367aceb67950ece51145e1c3742 *man/simJMWSVdata.Rd
49895ea875c46bb72e6ffdd024db13d0 *man/simJMdata.Rd
561be33f8ac99cad1692cbc8883ccdba *man/simmvJMdata.Rd
77e65a10a8a3d66121a89acf9892f1d8 *man/simmvJMdatalm.Rd
26c2d31e4924ab23b58f6701c55c0247 *man/summary.Concordance.Rd
c53358e55989c5e72c50425ace93e31f *man/summary.DynPredAcc.Rd
d1a22d9aaba886288c85827370653114 *man/summary.Rd
41c429834f8b392481cb300835f5165b *man/survfitJM.Rd
687cc58044747eba4f43ea3b2fa582a0 *man/survfitJMMLSM.Rd
a85b3d17811aba61b2328bd3dc54f5ca *man/survfitjmcs.Rd
cdc67b15385938a36f67affadbf282bc *man/survfitmvjmcs.Rd
0edc65c6a6599eb853c9b55932cb97a4 *man/timeplot.Rd
59400050157ca67e20e1d0596564c59a *man/vcov.Rd
e53d783993eb1d8362b39c567a6c396f *man/ydata.Rd
2542d36c95b1a1f03bcd76c2b557b22f *man/ydatah.Rd
a6da1b701c1f8fc1eeb5e78ba999e166 *src/GetrisksetC.cpp
2b4e4a822a538190e512ff75113a0f90 *src/GetrisksetCSF.cpp
de46bce4aa551e998c8483cfb405eaab *src/Makevars
de46bce4aa551e998c8483cfb405eaab *src/Makevars.win
45748e2bd652d11aaf888962d138457a *src/OLS.cpp
fc32dcdc57a9591157f9ff04413b2a36 *src/RcppExports.cpp
7c5f9e4f4c00257a766154c60b3b18c9 *src/basics.cpp
53863a3ccfc8f601577760f1de9b066e *src/basics.h
34cab3c45ef5bf7943684bf228234a41 *src/getBayes.cpp
0e86f615f3d32d6f05d6cdb944c3a73c *src/getCov.cpp
1d851f5a5f332ce07cf3771fecbf984b *src/getCovSF.cpp
5388ce0195dee54b137217796fc486c0 *src/getCovSF_JMH.cpp
26a35abec6da3471c18ebd87557553b7 *src/getCov_JMH.cpp
9e741e84ad57b6b7e4bce86d2f71636d *src/getEC.cpp
20127b51c0294960e51ff67fd4220b44 *src/getECIF.cpp
7d256127e43c12a385d999dd71b15894 *src/getECIFall.cpp
f0760769ee3d890f16dee6eb95736b40 *src/getECSF.cpp
3f75484cb2150ec922eceffb81ccf43f *src/getECSFad.cpp
3a4b90f3bf57d322e4de0e8e24c84cda *src/getECad.cpp
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253dcf2a53c23f1ec710f77ecd0a8942 *src/getECpseudoSF.cpp
ba0e33c8cc07aa81997dd0eb404ad6aa *src/getECstandard.cpp
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53aefd39f99ab3acfc82ecbd0c28d62e *src/getES.cpp
0efc21407b04ba0c87b628a55b32b498 *src/getHazard.cpp
78abaa308e6a476c792792a4ca3d88b4 *src/getHazardSF.cpp
f50ce4fbd8b6e6cbb77c5c21cd7690c8 *src/getMC.cpp
70434b6374b02083f80f82de3d6c99e6 *src/getMCSF.cpp
563cf6c84a02e976ccb645691e8143ab *src/getMCSF_JMH.cpp
5602721a61da7c2159a8ca828b7393d1 *src/getMC_JMH.cpp
2340372ec55905b6a222b60cb6c2c318 *src/getMNA.cpp
3f0c72a1e0846d7e8f020bda7fcfc538 *src/getMaGH.cpp
2fba13d484bc8682c4978a0e5e465559 *src/getPus.cpp
0f8e4f4a3d34fbc5be2c2a8110f3a0e9 *src/getPusCR.cpp
38d2e6eabd31103a35fe8061e4107262 *src/getfitted.cpp
8babb406f8652a9bcf37f637832f08d9 *src/getfittedSurv.cpp
6fe4819b3c8a904ae5fa4ab932da953e *src/getfittedSurvSF.cpp
c279dc9be89bac60d02baff49b778d87 *src/getloglikeC.cpp
9151741ff6707bc6763c565dec3baa85 *src/getloglikeCSF.cpp
58163ce41ab4216230b3cf038854a4d3 *src/getloglikeCSFad.cpp
066c5e36863561d4a0bf6bce647ba118 *src/getloglikeCad.cpp
f0c56a4de814d8f3505531a263736d8e *src/getloglikeCpseudo.cpp
33e453b32b570230248f719d288f8d15 *src/getloglikeCpseudoSF.cpp
cb4476703692a06ac40dc26c768e01b0 *src/getloglikeCstandard.cpp
d9e667eb357bbdbc41aead5143051d72 *src/getloglikeCstandardSF.cpp
283bdc8073cbb1dd98555a2997e4dda7 *src/getmvCov.cpp
617bd756ca2f627c5b186592c1dab615 *src/getmvCovSF.cpp
36c1c79175461205d3a2e7499bad236c *src/getmvCov_lm.cpp
1dc8a765a613c5fb38d68be9bdea0293 *src/getmvCov_lmSF.cpp
e0a52e51c997985b55683742a2593fa6 *src/mixedmethod.cpp
39ca192572935de8859cad786524ed14 *src/nonmix.cpp
b5782bc02abd06a4d218e6fef0db12f2 *src/normalApproxSF.cpp
ea97cc01fea86686d9cf1fa60af65ed9 *src/normalapprox_lm.cpp
533dec411089fd602db59f826aae1a0f *src/normalapprox_lmSF.cpp
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
46650f74197e84205e72819ae9c14663 *tests/testthat.R
4d6f03d6aaa13f79175b5ee7a5987ccb *tests/testthat/test_jmcs.R
