simulate_reproductivenumber.R
. You can call this function directly, without going through the shiny app. Type ?simulate_reproductivenumber
into the R console for more information (you need to exit the graphical interface first or start a new R session). If you go that route, you need to use the results returned from this function and produce useful output (such as a plot) yourself.vignette('DSAIDE')
into the R console).Fine, Paul, Ken Eames, and David L Heymann. 2011. “‘Herd Immunity’: A Rough Guide.” Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America 52 (7): 911–16. doi:10.1093/cid/cir007.
Heffernan, J M, R J Smith, and L M Wahl. 2005. “Perspectives on the Basic Reproductive Ratio.” Journal of the Royal Society, Interface 2 (4): 281–93. doi:10.1098/rsif.2005.0042.
Roberts, M G. 2007. “The Pluses and Minuses of R0.” Journal of the Royal Society, Interface 4 (16): 949–61. doi:10.1098/rsif.2007.1031.
Wallinga, J., and M. Lipsitch. 2007. “How generation intervals shape the relationship between growth rates and reproductive numbers.” Proceedings of the Royal Society B 274 (1609): 599–604.