This package implements the method csSAM that computes cell-specific differential expression using SAM, as described in:
“Cell type-specific gene expression differences in complex tissues.”
Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, Hastie T, Sarwal MM, Davis MM and Butte AJ (2010).
Nature methods, 7(4), pp. 287–9. ISSN 1548-7105,
http://dx.doi.org/10.1038/nmeth.1439, http://www.ncbi.nlm.nih.gov/pubmed/20208531.