+ cd /Users/pd/r-devel + rm -rf BUILD-test + cp -a BUILD-dist BUILD-test + cd BUILD-test + bin/Rscript - Read 34 items trying URL 'https://cloud.R-project.org/src/contrib/date_1.2-43.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/chron_2.3-63.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/round_0.21-0.2.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/mathjaxr_2.0-0.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/knitr_1.52.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/vcd_1.4-14.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/coin_1.4-5.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/pcaPP_2.0-5.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/Kendall_2.2.2.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/SuppDists_1.1-9.9.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/pspearman_0.3-1.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/robustbase_0.99-7.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/multcomp_1.4-32.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/latticeExtra_0.6-31.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/sfsmisc_1.1-25.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/SparseM_1.84-2.tar.gz' trying URL 'https://bioconductor.statistik.tu-dortmund.de/packages/3.23/bioc/src/contrib/graph_1.90.0.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/mvoutlier_2.1.4.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/fpc_2.2-15.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/ellipse_0.5.0.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/carData_3.0-6.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/tree_1.0-47.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/xml2_1.6.0.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/curl_8.0.0.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/commonmark_2.0.0.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/xfun_0.60.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/V8_8.2.0.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/bibtex_0.5.2.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/jsonlite_2.0.0.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/snow_0.4-4.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/mirai_2.7.2.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/parallelly_1.48.0.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/colorspace_2.1-3.tar.gz' trying URL 'https://cloud.R-project.org/src/contrib/zoo_1.9-0.tar.gz' * installing *source* package ‘date’ ... ** this is package ‘date’ version ‘1.2-43’ ** package ‘date’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c char_date.c -o char_date.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o date.so char_date.o init.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-date/00new/date/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (date) * installing *source* package ‘chron’ ... ** this is package ‘chron’ version ‘2.3-63’ ** package ‘chron’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c chron_strs.c -o chron_strs.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c unpaste.c -o unpaste.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o chron.so chron_strs.o init.o unpaste.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-chron/00new/chron/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (chron) * installing *source* package ‘round’ ... ** this is package ‘round’ version ‘0.21-0.2’ ** package ‘round’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c R2C.c -o R2C.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c fround.c -o fround.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c mathC99.c -o mathC99.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o round.so R2C.o fround.o init.o mathC99.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-round/00new/round/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (round) * installing *source* package ‘mathjaxr’ ... ** this is package ‘mathjaxr’ version ‘2.0-0’ ** package ‘mathjaxr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mathjaxr) * installing *source* package ‘pcaPP’ ... ** this is package ‘pcaPP’ version ‘2.0-5’ ** package ‘pcaPP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c L1Median_HoCr.cpp -o L1Median_HoCr.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c L1Median_VardiZhang.cpp -o L1Median_VardiZhang.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c ML_meal.cpp -o ML_meal.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c ML_package.cpp -o ML_package.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c ML_passrng.cpp -o ML_passrng.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c PCAgrid.cpp -o PCAgrid.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c PCAproj.cpp -o PCAproj.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c R_meal.cpp -o R_meal.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c R_meal_BLAS.cpp -o R_meal_BLAS.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c R_package.cpp -o R_package.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c cov.kendall.cpp -o cov.kendall.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c hess.cpp -o hess.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c l1median.cpp -o l1median.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c outSDo.cpp -o outSDo.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c pcaPP.cpp -o pcaPP.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c pcaPP_init.c -o pcaPP_init.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c qnn.cpp -o qnn.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -g -O2 -c smat.cpp -o smat.o g++ -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o pcaPP.so L1Median_HoCr.o L1Median_VardiZhang.o ML_meal.o ML_package.o ML_passrng.o PCAgrid.o PCAproj.o R_meal.o R_meal_BLAS.o R_package.o cov.kendall.o hess.o l1median.o outSDo.o pcaPP.o pcaPP_init.o qnn.o smat.o -L/Users/pd/r-devel/BUILD-dist/lib -lRlapack -L/Users/pd/r-devel/BUILD-dist/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-pcaPP/00new/pcaPP/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcaPP) * installing *source* package ‘Kendall’ ... ** this is package ‘Kendall’ version ‘2.2.2’ ** package ‘Kendall’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’ using SDK: ‘MacOSX26.2.sdk’ gfortran -fPIC -g -O2 -c Kendall.f -o Kendall.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o Kendall.so Kendall.o -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-Kendall/00new/Kendall/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Kendall) * installing *source* package ‘SuppDists’ ... ** this is package ‘SuppDists’ version ‘1.1-9.9’ ** package ‘SuppDists’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c dists.cpp -o dists.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c init.cpp -o init.o g++ -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o SuppDists.so dists.o init.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-SuppDists/00new/SuppDists/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SuppDists) * installing *source* package ‘pspearman’ ... ** this is package ‘pspearman’ version ‘0.3-1’ ** package ‘pspearman’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c prho.c -o prho.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o pspearman.so prho.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-pspearman/00new/pspearman/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pspearman) * installing *source* package ‘robustbase’ ... ** this is package ‘robustbase’ version ‘0.99-7’ ** package ‘robustbase’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c R-rng4ftn.c -o R-rng4ftn.o gfortran -fPIC -g -O2 -c eigen.f -o eigen.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c lmrob.c -o lmrob.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c mc.c -o mc.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c monitor.c -o monitor.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c qn_sn.c -o qn_sn.o gfortran -fPIC -g -O2 -c rf-common.f -o rf-common.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gfortran -fPIC -g -O2 -c rffastmcd.f -o rffastmcd.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gfortran -fPIC -g -O2 -c rfltsreg.f -o rfltsreg.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gfortran -fPIC -g -O2 -c rllarsbi.f -o rllarsbi.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c rob-utils.c -o rob-utils.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c rowMedians.c -o rowMedians.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c wgt_himed.c -o wgt_himed.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o robustbase.so R-rng4ftn.o eigen.o init.o lmrob.o mc.o monitor.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o rllarsbi.o rob-utils.o rowMedians.o wgt_himed.o -L/Users/pd/r-devel/BUILD-dist/lib -lRlapack -L/Users/pd/r-devel/BUILD-dist/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath ld: warning: ignoring duplicate libraries: '-lemutls_w', '-lgfortran', '-lheapt_w', '-lquadmath' installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-robustbase/00new/robustbase/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘chgDefaults’ in package ‘robustbase’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robustbase) * installing *source* package ‘multcomp’ ... ** this is package ‘multcomp’ version ‘1.4-32’ ** package ‘multcomp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multcomp) * installing *source* package ‘latticeExtra’ ... ** this is package ‘latticeExtra’ version ‘0.6-31’ ** package ‘latticeExtra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (latticeExtra) * installing *source* package ‘sfsmisc’ ... ** this is package ‘sfsmisc’ version ‘1.1-25’ ** package ‘sfsmisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sfsmisc) * installing *source* package ‘SparseM’ ... ** this is package ‘SparseM’ version ‘1.84-2’ ** package ‘SparseM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’ using SDK: ‘MacOSX26.2.sdk’ gfortran -fPIC -g -O2 -c bckslv.f -o bckslv.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gfortran -fPIC -g -O2 -c chol.f -o chol.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gfortran -fPIC -g -O2 -c chol2csr.f -o chol2csr.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gfortran -fPIC -g -O2 -c cholesky.f -o cholesky.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gfortran -fPIC -g -O2 -c csr.f -o csr.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gfortran -fPIC -g -O2 -c extract.f -o extract.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c init.c -o init.o gfortran -fPIC -g -O2 -c sparskit.f -o sparskit.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gfortran -fPIC -g -O2 -c subscr.f -o subscr.o clang: warning: overriding deployment version from '16.0' to '26.0' [-Woverriding-deployment-version] gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o SparseM.so bckslv.o chol.o chol2csr.o cholesky.o csr.o extract.o init.o sparskit.o subscr.o -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-SparseM/00new/SparseM/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘diag’ from package ‘base’ in package ‘SparseM’ Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘SparseM’ Creating a generic function for ‘norm’ from package ‘base’ in package ‘SparseM’ Creating a generic function for ‘backsolve’ from package ‘base’ in package ‘SparseM’ Creating a generic function for ‘forwardsolve’ from package ‘base’ in package ‘SparseM’ Creating a generic function for ‘model.response’ from package ‘stats’ in package ‘SparseM’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SparseM) * installing *source* package ‘graph’ ... ** this is package ‘graph’ version ‘1.90.0’ ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c graph.c -o graph.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o graph.so graph.o mv graph.so BioC_graph.so installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-graph/00new/graph/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graph) * installing *source* package ‘ellipse’ ... ** this is package ‘ellipse’ version ‘0.5.0’ ** package ‘ellipse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ellipse) * installing *source* package ‘carData’ ... ** this is package ‘carData’ version ‘3.0-6’ ** package ‘carData’ successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (carData) * installing *source* package ‘tree’ ... ** this is package ‘tree’ version ‘1.0-47’ ** package ‘tree’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c grow.c -o grow.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c treefix.c -o treefix.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o tree.so grow.o init.o treefix.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-tree/00new/tree/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tree) * installing *source* package ‘xml2’ ... ** this is package ‘xml2’ version ‘1.6.0’ ** package ‘xml2’ successfully unpacked and MD5 sums checked ** using staged installation Using PKG_CFLAGS=-I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include Using PKG_LIBS=/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/libxml2 -lz -lpthread -licucore -lm ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c connection.cpp -o connection.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c init.c -o init.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c xml2_doc.cpp -o xml2_doc.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c xml2_init.c -o xml2_init.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c xml2_node.cpp -o xml2_node.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c xml2_output.cpp -o xml2_output.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c xml2_schema.cpp -o xml2_schema.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c xml2_url.cpp -o xml2_url.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include/libxml2 -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/include -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o g++ -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o /private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpzGBv1l/R.INSTALL5c96155666a4/xml2/.deps/libxml2 -lz -lpthread -licucore -lm installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-xml2/00new/xml2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xml2) * installing *source* package ‘curl’ ... ** this is package ‘curl’ version ‘8.0.0’ ** package ‘curl’ successfully unpacked and MD5 sums checked ** using staged installation Using autobrew bundle: curl-macos-8.14.1-universal.tar.xz Using PKG_CFLAGS=-I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include Using PKG_LIBS=/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/libcurl -L/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/lib -lapple_nghttp2 -lapple_ssl -lapple_crypto -lldap -lz -dynamic -Wl,-search_paths_first -lkrb5 -framework Security -framework SystemConfiguration -framework CoreFoundation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c callbacks.c -o callbacks.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c curl.c -o curl.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c download.c -o download.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c dryrun.c -o dryrun.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c escape.c -o escape.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c fetch.c -o fetch.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c findport.c -o findport.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c form.c -o form.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c getdate.c -o getdate.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c handle.c -o handle.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c ieproxy.c -o ieproxy.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c interrupt.c -o interrupt.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c multi.c -o multi.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c nslookup.c -o nslookup.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c options.c -o options.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c reflist.c -o reflist.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c split.c -o split.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c ssl.c -o ssl.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c typechecking.c -o typechecking.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c urlparser.c -o urlparser.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c utils.c -o utils.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c version.c -o version.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c winidn.c -o winidn.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/include -DSTRICT_R_HEADERS -DR_NO_REMAP -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c writer.c -o writer.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o curl.so callbacks.o curl.o download.o dryrun.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o urlparser.o utils.o version.o winidn.o writer.o /private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/libcurl -L/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpN2OWIu/R.INSTALL5fc12a5e59bd/curl/.deps/lib -lapple_nghttp2 -lapple_ssl -lapple_crypto -lldap -lz -dynamic -Wl,-search_paths_first -lkrb5 -framework Security -framework SystemConfiguration -framework CoreFoundation installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-curl/00new/curl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (curl) * installing *source* package ‘commonmark’ ... ** this is package ‘commonmark’ version ‘2.0.0’ ** package ‘commonmark’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c extensions.c -o extensions.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c wrapper.c -o wrapper.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/cmark.c -o cmark/cmark.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/node.c -o cmark/node.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/iterator.c -o cmark/iterator.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/blocks.c -o cmark/blocks.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/inlines.c -o cmark/inlines.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/scanners.c -o cmark/scanners.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/utf8.c -o cmark/utf8.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/buffer.c -o cmark/buffer.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/references.c -o cmark/references.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/render.c -o cmark/render.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/man.c -o cmark/man.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/xml.c -o cmark/xml.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/html.c -o cmark/html.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/latex.c -o cmark/latex.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/arena.c -o cmark/arena.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/plugin.c -o cmark/plugin.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/registry.c -o cmark/registry.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c cmark/map.c -o cmark/map.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c extensions/autolink.c -o extensions/autolink.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c extensions/table.c -o extensions/table.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c extensions/tasklist.c -o extensions/tasklist.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark) * installing *source* package ‘xfun’ ... ** this is package ‘xfun’ version ‘0.60’ ** package ‘xfun’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c base64.c -o base64.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c rand_lcg.c -o rand_lcg.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o xfun.so base64.o init.o rand_lcg.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-xfun/00new/xfun/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xfun) * installing *source* package ‘bibtex’ ... ** this is package ‘bibtex’ version ‘0.5.2’ ** package ‘bibtex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bibtex) * installing *source* package ‘jsonlite’ ... ** this is package ‘jsonlite’ version ‘2.0.0’ ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c base64.c -o base64.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c collapse_array.c -o collapse_array.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c collapse_object.c -o collapse_object.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c collapse_pretty.c -o collapse_pretty.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c escape_chars.c -o escape_chars.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c integer64_to_na.c -o integer64_to_na.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c is_datelist.c -o is_datelist.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c is_recordlist.c -o is_recordlist.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c is_scalarlist.c -o is_scalarlist.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c modp_numtoa.c -o modp_numtoa.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c null_to_na.c -o null_to_na.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c num_to_char.c -o num_to_char.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c parse.c -o parse.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c prettify.c -o prettify.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c push_parser.c -o push_parser.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c r-base64.c -o r-base64.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c register.c -o register.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c row_collapse.c -o row_collapse.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c transpose_list.c -o transpose_list.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c validate.c -o validate.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c yajl/yajl.c -o yajl/yajl.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -Iyajl/api -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-jsonlite/00new/jsonlite/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime” in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms” in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json” in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64” in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist” in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar” in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf” in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc” in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jsonlite) * installing *source* package ‘snow’ ... ** this is package ‘snow’ version ‘0.4-4’ ** package ‘snow’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (snow) * installing *source* package ‘mirai’ ... ** this is package ‘mirai’ version ‘2.7.2’ ** package ‘mirai’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirai) * installing *source* package ‘parallelly’ ... ** this is package ‘parallelly’ version ‘1.48.0’ ** package ‘parallelly’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c 000.init.c -o 000.init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c calc-serialized-size.c -o calc-serialized-size.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c test_tcp_port.c -o test_tcp_port.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o parallelly.so 000.init.o calc-serialized-size.o test_tcp_port.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-parallelly/00new/parallelly/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parallelly) * installing *source* package ‘colorspace’ ... ** this is package ‘colorspace’ version ‘2.1-3’ ** package ‘colorspace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c colorspace.c -o colorspace.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o colorspace.so colorspace.o init.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-colorspace/00new/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorspace) * installing *source* package ‘zoo’ ... ** this is package ‘zoo’ version ‘1.9-0’ ** package ‘zoo’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/opt/R/arm64/include -fPIC -g -O2 -c coredata.c -o coredata.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/opt/R/arm64/include -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I../inst/include -I/opt/R/arm64/include -fPIC -g -O2 -c lag.c -o lag.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o zoo.so coredata.o init.o lag.o installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-zoo/00new/zoo/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zoo) * installing *source* package ‘knitr’ ... ** this is package ‘knitr’ version ‘1.52’ ** package ‘knitr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitr) * installing *source* package ‘vcd’ ... ** this is package ‘vcd’ version ‘1.4-14’ ** package ‘vcd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vcd) * installing *source* package ‘coin’ ... ** this is package ‘coin’ version ‘1.4-5’ ** package ‘coin’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I'/Users/pd/r-devel/BUILD-dist/library/libcoin/include' -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c Helpers.c -o Helpers.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I'/Users/pd/r-devel/BUILD-dist/library/libcoin/include' -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c StreitbergRoehmel.c -o StreitbergRoehmel.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I'/Users/pd/r-devel/BUILD-dist/library/libcoin/include' -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c coin-init.c -o coin-init.o gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I'/Users/pd/r-devel/BUILD-dist/library/libcoin/include' -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c vandeWiel.c -o vandeWiel.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o coin.so Helpers.o StreitbergRoehmel.o coin-init.o vandeWiel.o -L/Users/pd/r-devel/BUILD-dist/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-coin/00new/coin/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (coin) * installing *source* package ‘mvoutlier’ ... ** this is package ‘mvoutlier’ version ‘2.1.4’ ** package ‘mvoutlier’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvoutlier) * installing *source* package ‘fpc’ ... ** this is package ‘fpc’ version ‘2.2-15’ ** package ‘fpc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fpc) * installing *source* package ‘V8’ ... ** this is package ‘V8’ version ‘8.2.0’ ** package ‘V8’ successfully unpacked and MD5 sums checked ** using staged installation Found C++20 compiler: g++ Using autobrew bundle: v8-14.6.202.26-sonoma-universal.tar.xz ** libs specified C++20 using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using C++20 using SDK: ‘MacOSX26.2.sdk’ g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpRgI6XD/R.INSTALL67521d6c3af0/V8/.deps/include -DV8_COMPRESS_POINTERS -DV8_ENABLE_SANDBOX -I'/Users/pd/r-devel/BUILD-dist/library/Rcpp/include' -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++20 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpRgI6XD/R.INSTALL67521d6c3af0/V8/.deps/include -DV8_COMPRESS_POINTERS -DV8_ENABLE_SANDBOX -I'/Users/pd/r-devel/BUILD-dist/library/Rcpp/include' -I/opt/R/arm64/include -fvisibility=hidden -fPIC -g -O2 -c bindings.cpp -o bindings.o g++ -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o V8.so RcppExports.o bindings.o ../.deps/v8_monolith installing to /Users/pd/r-devel/BUILD-dist/library/00LOCK-V8/00new/V8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (V8) The downloaded source packages are in ‘/private/var/folders/yj/z2l5py591cs9twfddh80cr880000gn/T/RtmpgPecvy/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done real 2m21.851s user 0m57.750s sys 0m16.618s + make check-all Testing examples for package ‘base’ Testing examples for package ‘tools’ comparing ‘tools-Ex.Rout’ to ‘tools-Ex.Rout.save’ ... OK Testing examples for package ‘utils’ Testing examples for package ‘grDevices’ comparing ‘grDevices-Ex.Rout’ to ‘grDevices-Ex.Rout.save’ ... OK Testing examples for package ‘graphics’ comparing ‘graphics-Ex.Rout’ to ‘graphics-Ex.Rout.save’ ... OK Testing examples for package ‘stats’ comparing ‘stats-Ex.Rout’ to ‘stats-Ex.Rout.save’ ... OK Testing examples for package ‘datasets’ comparing ‘datasets-Ex.Rout’ to ‘datasets-Ex.Rout.save’ ... OK Testing examples for package ‘methods’ Testing examples for package ‘grid’ comparing ‘grid-Ex.Rout’ to ‘grid-Ex.Rout.save’ ... OK Testing examples for package ‘splines’ comparing ‘splines-Ex.Rout’ to ‘splines-Ex.Rout.save’ ... OK Testing examples for package ‘stats4’ comparing ‘stats4-Ex.Rout’ to ‘stats4-Ex.Rout.save’ ... OK Testing examples for package ‘tcltk’ Testing examples for package ‘compiler’ Testing examples for package ‘parallel’ running strict specific tests running code in '../../R/tests/eval-etc.R' ... OK comparing 'eval-etc.Rout' to '../../R/tests/eval-etc.Rout.save' ... OK running code in '../../R/tests/simple-true.R' ... OK comparing 'simple-true.Rout' to '../../R/tests/simple-true.Rout.save' ... OK running code in '../../R/tests/arith-true.R' ... OK comparing 'arith-true.Rout' to '../../R/tests/arith-true.Rout.save' ... OK running code in '../../R/tests/arith.R' ... OK comparing 'arith.Rout' to '../../R/tests/arith.Rout.save' ... OK running code in '../../R/tests/lm-tests.R' ... OK comparing 'lm-tests.Rout' to '../../R/tests/lm-tests.Rout.save' ... OK running code in '../../R/tests/ok-errors.R' ... OK comparing 'ok-errors.Rout' to '../../R/tests/ok-errors.Rout.save' ... OK running code in '../../R/tests/method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to '../../R/tests/method-dispatch.Rout.save' ... OK running code in '../../R/tests/any-all.R' ... OK comparing 'any-all.Rout' to '../../R/tests/any-all.Rout.save' ... OK running code in '../../R/tests/structure.R' ... OK comparing 'structure.Rout' to '../../R/tests/structure.Rout.save' ... OK running code in '../../R/tests/d-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to '../../R/tests/d-p-q-r-tests.Rout.save' ... OK running sloppy specific tests running code in '../../R/tests/complex.R' ... OK comparing 'complex.Rout' to '../../R/tests/complex.Rout.save' ... OK running code in '../../R/tests/print-tests.R' ... OK comparing 'print-tests.Rout' to '../../R/tests/print-tests.Rout.save' ... OK running code in '../../R/tests/lapack.R' ... OK comparing 'lapack.Rout' to '../../R/tests/lapack.Rout.save' ... OK running code in '../../R/tests/datasets.R' ... OK comparing 'datasets.Rout' to '../../R/tests/datasets.Rout.save' ... OK running code in '../../R/tests/datetime.R' ... OK comparing 'datetime.Rout' to '../../R/tests/datetime.Rout.save' ... OK running code in '../../R/tests/iec60559.R' ... OK comparing 'iec60559.Rout' to '../../R/tests/iec60559.Rout.save' ... OK running code in '../../R/tests/eval-etc-2.R' ... OK comparing 'eval-etc-2.Rout' to '../../R/tests/eval-etc-2.Rout.save' ... OK checking Sys.timezone ... running code in '../../R/tests/timezone.R' ... OK running regression tests ... running code in '../../R/tests/array-subset.R' ... OK running code in '../../R/tests/classes-methods.R' ... OK running code in '../../R/tests/reg-tests-1a.R' ... OK running code in '../../R/tests/reg-tests-1b.R' ... OK running code in '../../R/tests/reg-tests-1c.R' ... OK running code in '../../R/tests/reg-tests-1d.R' ... OK running code in '../../R/tests/reg-tests-1e.R' ... OK running code in '../../R/tests/reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to '../../R/tests/reg-tests-2.Rout.save' ... OK running code in '../../R/tests/reg-examples1.R' ... OK running code in '../../R/tests/reg-examples2.R' ... OK running code in '../../R/tests/reg-packages.R' ... OK running code in '../../R/tests/p-qbeta-strict-tst.R' ... OK running code in '../../R/tests/d-p-q-r-tst-2.R' ... OK running code in '../../R/tests/r-strict-tst.R' ... OK running code in '../../R/tests/reg-IO.R' ... OK comparing 'reg-IO.Rout' to '../../R/tests/reg-IO.Rout.save' ... OK running code in '../../R/tests/reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to '../../R/tests/reg-IO2.Rout.save' ... OK running code in '../../R/tests/reg-plot.R' ... OK comparing 'reg-plot.pdf' to '../../R/tests/reg-plot.pdf.save' ... OK running code in '../../R/tests/reg-S4.R' ... OK comparing 'reg-S4.Rout' to '../../R/tests/reg-S4.Rout.save' ... OK running code in '../../R/tests/reg-S4-examples.R' ... OK running code in '../../R/tests/reg-BLAS.R' ... OK running code in '../../R/tests/reg-encodings.R' ... OK running code in '../../R/tests/reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to '../../R/tests/reg-tests-3.Rout.save' ... OK running code in '../../R/tests/reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to '../../R/tests/reg-examples3.Rout.save' ... OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in '../../R/tests/reg-plot-latin1.R' ... OK comparing 'reg-plot-latin1.pdf' to '../../R/tests/reg-plot-latin1.pdf.save' ... OK running tests of Internet functions running code in '../../R/tests/internet.R' ... OK comparing 'internet.Rout' to '../../R/tests/internet.Rout.save' ... OK running tests of date-time printing expect platform-specific differences running code in '../../R/tests/datetime2.R' ... OK comparing 'datetime2.Rout' to '../../R/tests/datetime2.Rout.save' ... OK running code in '../../R/tests/datetime3.R' ... OK running code in '../../R/tests/datetime4.R' ... OK comparing 'datetime4.Rout' to '../../R/tests/datetime4.Rout.save' ... OK running code in '../../R/tests/datetime5.R' ... OK comparing 'datetime5.Rout' to '../../R/tests/datetime5.Rout.save' ... OK running tests of documentation examples running code in 'R-intro.R' ... OK comparing 'R-intro.Rout' to '../../R/tests/R-intro.Rout.save' ... OK using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ gcc -std=gnu23 -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -g -O2 -c R-exts.c -o R-exts.o gcc -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/R/arm64/lib -o R-exts.so R-exts.o running code in 'R-exts.R' ... OK running tests of consistency of as/is.* creating 'isas-tests.R' running code in 'isas-tests.R' ... OK comparing 'isas-tests.Rout' to '../../R/tests/isas-tests.Rout.save' ... OK rm isas-tests.R running tests of random deviate generation running code in '../../R/tests/p-r-random-tests.R' ... OK comparing 'p-r-random-tests.Rout' to '../../R/tests/p-r-random-tests.Rout.save' ... OK running demos from base and stats running code in '../../R/tests/demos.R' ... OK comparing 'demos.Rout' to '../../R/tests/demos.Rout.save' ... OK running code in '../../R/tests/demos2.R' ... OK running tests of primitives running code in '../../R/tests/primitives.R' ... OK running regexp regression tests running tests of translation running code in '../../R/tests/reg-translation.R' ... OK running more Internet tests running code in '../../R/tests/internet2.R' ... OK running code in '../../R/tests/libcurl.R' ... OK running tests of CRAN tools (can be slow unless mirror is local) running code in '../../R/tests/CRANtools.R' ... OK running tests to possibly trigger segfaults creating 'no-segfault.R' running code in 'no-segfault.R' ... OK testing building standalone Rmath config.status: creating src/nmath/standalone/Makefile running unit tests for the condition system running code in '../../R/tests/conditions.R' ... OK running other miscellaneous devel tests running code in '../../R/tests/misc-devel.R' ... OK checking package 'base' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/base.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:26:44 UTC * using option ‘--no-build-vignettes’ * looks like ‘base’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking examples ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK checking package 'tools' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/tools.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:27:13 UTC * using option ‘--no-build-vignettes’ * looks like ‘tools’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking R/sysdata.rda ... OK * checking compiled code ... OK * checking examples ... SKIPPED * checking tests ... Running ‘bibtools.R’ Comparing ‘bibtools.Rout’ to ‘bibtools.Rout.save’ ... OK Running ‘codeFilesAppend.R’ Running ‘hashes.R’ Running ‘QC.R’ Running ‘Rd.R’ Running ‘Rd2HTML.R’ Running ‘Rd2pdf.R’ Running ‘S3.R’ Running ‘undoc.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'utils' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/utils.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:27:43 UTC * using option ‘--no-build-vignettes’ * looks like ‘utils’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking R/sysdata.rda ... OK * checking compiled code ... OK * checking files in ‘vignettes’ ... OK * checking examples ... SKIPPED * checking tests ... Running ‘charclass.R’ Running ‘completion.R’ Running ‘relist.R’ Running ‘Stangle-tst.R’ Running ‘Sweave-tst.R’ Running ‘SweaveGetSourceName-tst.R’ Running ‘tar.R’ OK * checking package vignettes ... OK * checking running R code from vignettes ... ‘Sweave.Rnw’ using ‘UTF-8’... OK OK * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK checking package 'grDevices' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/grDevices.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:28:16 UTC * using option ‘--no-build-vignettes’ * looks like ‘grDevices’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking compiled code ... OK * checking examples ... SKIPPED * checking tests ... Running ‘convertColor-tests.R’ Running ‘encodings.R’ Comparing ‘encodings.Rout’ to ‘encodings.Rout.save’ ... OK Running ‘encodings2.R’ Comparing ‘encodings2.Rout’ to ‘encodings2.Rout.save’ ... OK Running ‘encodings3.R’ Comparing ‘encodings3.Rout’ to ‘encodings3.Rout.save’ ... OK Running ‘grDev-tsts.R’ Running ‘palettes-tests.R’ Running ‘ps-tests.R’ Comparing ‘ps-tests.Rout’ to ‘ps-tests.Rout.save’ ... OK Running ‘saved-recordPlot.R’ Running ‘urw-fonts.R’ Running ‘xyTable.R’ Comparing ‘xyTable.Rout’ to ‘xyTable.Rout.save’ ... OK Running ‘zzcheck-encodings.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'graphics' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/graphics.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:28:33 UTC * using option ‘--no-build-vignettes’ * looks like ‘graphics’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking compiled code ... OK * checking examples ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK checking package 'stats' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/stats.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:28:45 UTC * using option ‘--no-build-vignettes’ * looks like ‘stats’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking files in ‘vignettes’ ... OK * checking examples ... SKIPPED * checking tests ... Running ‘arimaML.R’ Running ‘bandwidth.R’ Comparing ‘bandwidth.Rout’ to ‘bandwidth.Rout.save’ ... OK Running ‘cmdscale.R’ Running ‘density_chk.R’ Running ‘dpq-xtra.R’ Running ‘drop1-polr.R’ Running ‘factanal-tst.R’ Running ‘glm-etc.R’ Running ‘glm.R’ Comparing ‘glm.Rout’ to ‘glm.Rout.save’ ... OK Running ‘ig_glm.R’ Running ‘ks-test.R’ Comparing ‘ks-test.Rout’ to ‘ks-test.Rout.save’ ... OK Running ‘loglin.R’ Comparing ‘loglin.Rout’ to ‘loglin.Rout.save’ ... OK Running ‘nafns.R’ Running ‘nlm.R’ Running ‘nls.R’ Comparing ‘nls.Rout’ to ‘nls.Rout.save’ ... OK Running ‘NLSstClosest.R’ Running ‘offsets.R’ Running ‘ppr.R’ Running ‘psmirnov.R’ Comparing ‘psmirnov.Rout’ to ‘psmirnov.Rout.save’ ... OK Running ‘simulate.R’ Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ... OK Running ‘smooth.spline.R’ Running ‘table-margins.R’ Running ‘ts-tests.R’ OK * checking package vignettes ... OK * checking running R code from vignettes ... ‘reshape.Rnw’ using ‘UTF-8’... OK OK * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK checking package 'datasets' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/datasets.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:29:27 UTC * using option ‘--no-build-vignettes’ * looks like ‘datasets’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking examples ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK checking package 'methods' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/methods.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:29:35 UTC * using option ‘--no-build-vignettes’ * looks like ‘methods’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... NOTE Exported functions without usage information: .doTracePrint .untracedFunction externalRefMethod initFieldArgs initRefFields * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking compiled code ... OK * checking examples ... SKIPPED * checking tests ... Running ‘basicRefClass.R’ Running ‘duplicateClass.R’ Running ‘envRefClass.R’ Running ‘fieldAssignments.R’ Running ‘mixinInitialize.R’ Running ‘namesAndSlots.R’ Running ‘nextWithDots.R’ Running ‘refClassExample.R’ Running ‘S3.R’ Running ‘testConditionalIs.R’ Running ‘testGroupGeneric.R’ Running ‘testIs.R’ OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/pd/r-devel/BUILD-test/tests/methods.Rcheck/00check.log’ for details. checking package 'grid' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/grid.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:29:51 UTC * using option ‘--no-build-vignettes’ * looks like ‘grid’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking compiled code ... OK * checking files in ‘vignettes’ ... OK * checking examples ... SKIPPED * checking tests ... Running ‘bugs.R’ Running ‘clippaths.R’ Running ‘compositing.R’ Running ‘coords.R’ Running ‘glyphs.R’ Running ‘grep.R’ Comparing ‘grep.Rout’ to ‘grep.Rout.save’ ... OK Running ‘groups.R’ Running ‘masks.R’ Running ‘nesting.R’ Running ‘paths.R’ Running ‘patterns.R’ Running ‘reg.R’ Running ‘testls.R’ Comparing ‘testls.Rout’ to ‘testls.Rout.save’ ... OK Running ‘units.R’ OK * checking package vignettes ... OK * checking running R code from vignettes ... ‘displaylist.Rnw’ using ‘UTF-8’... OK ‘frame.Rnw’ using ‘UTF-8’... OK ‘grid.Rnw’ using ‘UTF-8’... OK ‘grobs.Rnw’ using ‘UTF-8’... OK ‘interactive.Rnw’ using ‘UTF-8’... OK ‘locndimn.Rnw’ using ‘UTF-8’... OK ‘moveline.Rnw’ using ‘UTF-8’... OK ‘nonfinite.Rnw’ using ‘UTF-8’... OK ‘plotexample.Rnw’ using ‘UTF-8’... OK ‘rotated.Rnw’ using ‘UTF-8’... OK ‘saveload.Rnw’ using ‘UTF-8’... OK ‘sharing.Rnw’ using ‘UTF-8’... OK ‘viewports.Rnw’ using ‘UTF-8’... OK OK * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK checking package 'splines' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/splines.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:30:11 UTC * using option ‘--no-build-vignettes’ * looks like ‘splines’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking compiled code ... OK * checking examples ... SKIPPED * checking tests ... Running ‘sparse-tst.R’ Running ‘spline-tst.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'stats4' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/stats4.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:30:18 UTC * using option ‘--no-build-vignettes’ * looks like ‘stats4’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking examples ... SKIPPED * checking tests ... Running ‘confint.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'tcltk' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/tcltk.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:30:25 UTC * using option ‘--no-build-vignettes’ * looks like ‘tcltk’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking compiled code ... OK * checking examples ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK checking package 'compiler' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/compiler.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:30:31 UTC * using option ‘--no-build-vignettes’ * looks like ‘compiler’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking examples ... SKIPPED * checking tests ... Running ‘assign.R’ Running ‘basics.R’ Running ‘const.R’ Running ‘curexpr.R’ Running ‘envir.R’ Running ‘jit.R’ Running ‘loop.R’ Running ‘srcref.R’ Running ‘switch.R’ Running ‘vischk.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'parallel' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/parallel.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:30:39 UTC * using option ‘--no-build-vignettes’ * looks like ‘parallel’ is a base package * skipping installation test * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking compiled code ... OK * checking files in ‘vignettes’ ... OK * checking examples ... SKIPPED * checking tests ... Running ‘Master.R’ Running ‘RSeed.R’ OK * checking package vignettes ... OK * checking running R code from vignettes ... ‘parallel.Rnw’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK checking package 'MASS' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/MASS.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:30:47 UTC * checking for file ‘MASS/DESCRIPTION’ ... OK * this is package ‘MASS’ version ‘7.3-66’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking examples ... OK * checking for differences from example reference output ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘confint.R’ Running ‘cov.mcd.R’ Running ‘fitdistr.R’ Comparing ‘fitdistr.Rout’ to ‘fitdistr.Rout.save’ ... OK Running ‘glm.nb.R’ Running ‘glmmPQL.R’ Running ‘hubers.R’ Running ‘lme.R’ Running ‘loglm.R’ Running ‘polr.R’ Running ‘profile.R’ Running ‘regression.R’ Comparing ‘regression.Rout’ to ‘regression.Rout.save’ ... OK Running ‘rlm.R’ Running ‘scripts.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'lattice' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/lattice.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:31:32 UTC * checking for file ‘lattice/DESCRIPTION’ ... OK * this is package ‘lattice’ version ‘0.23-1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘auto-key.R’ Running ‘barchart-width.R’ Running ‘call.R’ Running ‘colorkey-title.R’ Running ‘dataframe-methods.R’ Running ‘dates.R’ Running ‘dotplotscoping.R’ Running ‘fontsize.R’ Running ‘levelplot.R’ Running ‘MASSch04.R’ Running ‘scales.R’ Running ‘shade-wireframe.R’ Running ‘summary.R’ Running ‘temp.R’ Running ‘test.R’ Running ‘wireframe.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'Matrix' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/Matrix.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:32:17 UTC * checking for file ‘Matrix/DESCRIPTION’ ... OK * this is package ‘Matrix’ version ‘1.7-6’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... NOTE Exported functions without usage information: .CR2RC .CR2T .dense2g .dense2kind .dense2m .dense2v .sparse2g .sparse2kind .sparse2m .sparse2v .SuiteSparse_version .T2CR .tCR2RC .validateCsparse c.sparseVector det Matrix.Version uniqTsparse * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking include directives in Makefiles ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘abIndex-tsts.R’ Running ‘base-matrix-fun.R’ Running ‘bind.R’ Comparing ‘bind.Rout’ to ‘bind.Rout.save’ ... OK Running ‘Class+Meth.R’ Running ‘dg_Matrix.R’ Running ‘dpo-test.R’ Running ‘dtpMatrix.R’ Running ‘factorizing.R’ Running ‘group-methods.R’ Running ‘indexing.R’ Comparing ‘indexing.Rout’ to ‘indexing.Rout.save’ ... OK Running ‘matprod.R’ Running ‘matr-exp.R’ Running ‘other-pkgs.R’ Running ‘packed-unpacked.R’ Running ‘Simple.R’ Running ‘spModel.matrix.R’ Running ‘symmDN.R’ Running ‘validObj.R’ Running ‘write-read.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/pd/r-devel/BUILD-test/tests/Matrix.Rcheck/00check.log’ for details. checking package 'nlme' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/nlme.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:33:40 UTC * checking for file ‘nlme/DESCRIPTION’ ... OK * this is package ‘nlme’ version ‘3.1-171’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking usage of KIND in Fortran files ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Processing ‘extras.Rin’ Running ‘anova.gls.R’ Running ‘augPred_lab.R’ Running ‘augPredmissing.R’ Running ‘coef.R’ Comparing ‘coef.Rout’ to ‘coef.Rout.save’ ... OK Running ‘contrMat.R’ Running ‘corMatrix.R’ Running ‘corStruct.R’ Running ‘data.frame.R’ Running ‘deparse.R’ Running ‘deviance.R’ Running ‘fitted.R’ Running ‘getData.R’ Running ‘getVarCov.R’ Running ‘gls.R’ Running ‘gnls-ch8.R’ Running ‘lme.R’ Comparing ‘lme.Rout’ to ‘lme.Rout.save’ ... OK Running ‘lmList.R’ Running ‘missing.R’ Comparing ‘missing.Rout’ to ‘missing.Rout.save’ ... OK Running ‘nlme.R’ Running ‘nlme2.R’ Running ‘predict.lme.R’ Running ‘scoping.R’ Running ‘sigma-fixed-etc.R’ Running ‘updateLme.R’ Running ‘varConstProp.R’ Running ‘varFixed.R’ Running ‘varIdent.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'survival' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/survival.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:34:43 UTC * checking for file ‘survival/DESCRIPTION’ ... OK * this is package ‘survival’ version ‘3.8-12’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... INFO installed size is 9.0Mb sub-directories of 1Mb or more: data 1.6Mb doc 5.1Mb R 1.2Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for differences from example reference output ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘aareg.R’ Comparing ‘aareg.Rout’ to ‘aareg.Rout.save’ ... OK Running ‘anova.R’ Comparing ‘anova.Rout’ to ‘anova.Rout.save’ ... OK Running ‘badname.R’ Comparing ‘badname.Rout’ to ‘badname.Rout.save’ ... OK Running ‘bladder.R’ Comparing ‘bladder.Rout’ to ‘bladder.Rout.save’ ... OK Running ‘book1.R’ Comparing ‘book1.Rout’ to ‘book1.Rout.save’ ... OK Running ‘book2.R’ Comparing ‘book2.Rout’ to ‘book2.Rout.save’ ... OK Running ‘book3.R’ Comparing ‘book3.Rout’ to ‘book3.Rout.save’ ... OK Running ‘book4.R’ Comparing ‘book4.Rout’ to ‘book4.Rout.save’ ... OK Running ‘book5.R’ Comparing ‘book5.Rout’ to ‘book5.Rout.save’ ... OK Running ‘book6.R’ Comparing ‘book6.Rout’ to ‘book6.Rout.save’ ... OK Running ‘book7.R’ Comparing ‘book7.Rout’ to ‘book7.Rout.save’ ... OK Running ‘brier.R’ Comparing ‘brier.Rout’ to ‘brier.Rout.save’ ... OK Running ‘cancer.R’ Comparing ‘cancer.Rout’ to ‘cancer.Rout.save’ ... OK Running ‘checkSurv2.R’ Comparing ‘checkSurv2.Rout’ to ‘checkSurv2.Rout.save’ ... OK Running ‘clogit.R’ Comparing ‘clogit.Rout’ to ‘clogit.Rout.save’ ... OK Running ‘concordance.R’ Comparing ‘concordance.Rout’ to ‘concordance.Rout.save’ ... OK Running ‘concordance2.R’ Comparing ‘concordance2.Rout’ to ‘concordance2.Rout.save’ ... OK Running ‘concordance3.R’ Comparing ‘concordance3.Rout’ to ‘concordance3.Rout.save’ ... OK Running ‘counting.R’ Comparing ‘counting.Rout’ to ‘counting.Rout.save’ ... OK Running ‘coxsurv.R’ Comparing ‘coxsurv.Rout’ to ‘coxsurv.Rout.save’ ... OK Running ‘coxsurv2.R’ Comparing ‘coxsurv2.Rout’ to ‘coxsurv2.Rout.save’ ... OK Running ‘coxsurv3.R’ Comparing ‘coxsurv3.Rout’ to ‘coxsurv3.Rout.save’ ... OK Running ‘coxsurv4.R’ Comparing ‘coxsurv4.Rout’ to ‘coxsurv4.Rout.save’ ... OK Running ‘coxsurv5.R’ Comparing ‘coxsurv5.Rout’ to ‘coxsurv5.Rout.save’ ... OK Running ‘coxsurv6.R’ Comparing ‘coxsurv6.Rout’ to ‘coxsurv6.Rout.save’ ... OK Running ‘detail.R’ Comparing ‘detail.Rout’ to ‘detail.Rout.save’ ... OK Running ‘difftest.R’ Comparing ‘difftest.Rout’ to ‘difftest.Rout.save’ ... OK Running ‘doaml.R’ Comparing ‘doaml.Rout’ to ‘doaml.Rout.save’ ... OK Running ‘doublecolon.R’ Comparing ‘doublecolon.Rout’ to ‘doublecolon.Rout.save’ ... OK Running ‘doweight.R’ Comparing ‘doweight.Rout’ to ‘doweight.Rout.save’ ... OK Running ‘dropspecial.R’ Comparing ‘dropspecial.Rout’ to ‘dropspecial.Rout.save’ ... OK Running ‘ekm.R’ Comparing ‘ekm.Rout’ to ‘ekm.Rout.save’ ... OK Running ‘expected.R’ Comparing ‘expected.Rout’ to ‘expected.Rout.save’ ... OK Running ‘expected2.R’ Comparing ‘expected2.Rout’ to ‘expected2.Rout.save’ ... OK Running ‘factor.R’ Comparing ‘factor.Rout’ to ‘factor.Rout.save’ ... OK Running ‘factor2.R’ Comparing ‘factor2.Rout’ to ‘factor2.Rout.save’ ... OK Running ‘finegray.R’ Comparing ‘finegray.Rout’ to ‘finegray.Rout.save’ ... OK Running ‘fr_cancer.R’ Comparing ‘fr_cancer.Rout’ to ‘fr_cancer.Rout.save’ ... OK Running ‘fr_kidney.R’ Comparing ‘fr_kidney.Rout’ to ‘fr_kidney.Rout.save’ ... OK Running ‘fr_lung.R’ Comparing ‘fr_lung.Rout’ to ‘fr_lung.Rout.save’ ... OK Running ‘fr_ovarian.R’ Comparing ‘fr_ovarian.Rout’ to ‘fr_ovarian.Rout.save’ ... OK Running ‘fr_rat1.R’ Comparing ‘fr_rat1.Rout’ to ‘fr_rat1.Rout.save’ ... OK Running ‘fr_resid.R’ Comparing ‘fr_resid.Rout’ to ‘fr_resid.Rout.save’ ... OK Running ‘fr_simple.R’ Comparing ‘fr_simple.Rout’ to ‘fr_simple.Rout.save’ ... OK Running ‘frailty.R’ Comparing ‘frailty.Rout’ to ‘frailty.Rout.save’ ... OK Running ‘frank.R’ Comparing ‘frank.Rout’ to ‘frank.Rout.save’ ... OK Running ‘infcox.R’ Comparing ‘infcox.Rout’ to ‘infcox.Rout.save’ ... OK Running ‘jasa.R’ Comparing ‘jasa.Rout’ to ‘jasa.Rout.save’ ... OK Running ‘model.matrix.R’ Comparing ‘model.matrix.Rout’ to ‘model.matrix.Rout.save’ ... OK Running ‘mstate.R’ Comparing ‘mstate.Rout’ to ‘mstate.Rout.save’ ... OK Running ‘mstate2.R’ Comparing ‘mstate2.Rout’ to ‘mstate2.Rout.save’ ... OK Running ‘mstrata.R’ Comparing ‘mstrata.Rout’ to ‘mstrata.Rout.save’ ... OK Running ‘multi2.R’ Comparing ‘multi2.Rout’ to ‘multi2.Rout.save’ ... OK Running ‘multi3.R’ Comparing ‘multi3.Rout’ to ‘multi3.Rout.save’ ... OK Running ‘multistate.R’ Comparing ‘multistate.Rout’ to ‘multistate.Rout.save’ ... OK Running ‘multistrata.R’ Running ‘neardate.R’ Comparing ‘neardate.Rout’ to ‘neardate.Rout.save’ ... OK Running ‘nested.R’ Comparing ‘nested.Rout’ to ‘nested.Rout.save’ ... OK Running ‘ovarian.R’ Comparing ‘ovarian.Rout’ to ‘ovarian.Rout.save’ ... OK Running ‘overlap.R’ Comparing ‘overlap.Rout’ to ‘overlap.Rout.save’ ... OK Running ‘prednew.R’ Comparing ‘prednew.Rout’ to ‘prednew.Rout.save’ ... OK Running ‘predsurv.R’ Comparing ‘predsurv.Rout’ to ‘predsurv.Rout.save’ ... OK Running ‘pseudo.R’ Comparing ‘pseudo.Rout’ to ‘pseudo.Rout.save’ ... OK Running ‘pspline.R’ Comparing ‘pspline.Rout’ to ‘pspline.Rout.save’ ... OK Running ‘pyear.R’ Comparing ‘pyear.Rout’ to ‘pyear.Rout.save’ ... OK Running ‘quantile.R’ Comparing ‘quantile.Rout’ to ‘quantile.Rout.save’ ... OK Running ‘r_lung.R’ Comparing ‘r_lung.Rout’ to ‘r_lung.Rout.save’ ... OK Running ‘r_resid.R’ Comparing ‘r_resid.Rout’ to ‘r_resid.Rout.save’ ... OK Running ‘r_sas.R’ Comparing ‘r_sas.Rout’ to ‘r_sas.Rout.save’ ... OK Running ‘r_scale.R’ Comparing ‘r_scale.Rout’ to ‘r_scale.Rout.save’ ... OK Running ‘r_stanford.R’ Comparing ‘r_stanford.Rout’ to ‘r_stanford.Rout.save’ ... OK Running ‘r_strata.R’ Comparing ‘r_strata.Rout’ to ‘r_strata.Rout.save’ ... OK Running ‘r_tdist.R’ Comparing ‘r_tdist.Rout’ to ‘r_tdist.Rout.save’ ... OK Running ‘r_user.R’ Comparing ‘r_user.Rout’ to ‘r_user.Rout.save’ ... OK Running ‘ratetable.R’ Comparing ‘ratetable.Rout’ to ‘ratetable.Rout.save’ ... OK Running ‘residms.R’ Comparing ‘residms.Rout’ to ‘residms.Rout.save’ ... OK Running ‘residsf.R’ Comparing ‘residsf.Rout’ to ‘residsf.Rout.save’ ... OK Running ‘royston.R’ Comparing ‘royston.Rout’ to ‘royston.Rout.save’ ... OK Running ‘rttright.R’ Comparing ‘rttright.Rout’ to ‘rttright.Rout.save’ ... OK Running ‘singtest.R’ Comparing ‘singtest.Rout’ to ‘singtest.Rout.save’ ... OK Running ‘strata2.R’ Comparing ‘strata2.Rout’ to ‘strata2.Rout.save’ ... OK Running ‘stratatest.R’ Comparing ‘stratatest.Rout’ to ‘stratatest.Rout.save’ ... OK Running ‘summary_survfit.R’ Comparing ‘summary_survfit.Rout’ to ‘summary_survfit.Rout.save’ ... OK Running ‘summarydf.R’ Comparing ‘summarydf.Rout’ to ‘summarydf.Rout.save’ ... OK Running ‘surv.R’ Comparing ‘surv.Rout’ to ‘surv.Rout.save’ ... OK Running ‘survcheck.R’ Comparing ‘survcheck.Rout’ to ‘survcheck.Rout.save’ ... OK Running ‘survexpm.R’ Comparing ‘survexpm.Rout’ to ‘survexpm.Rout.save’ ... OK Running ‘survfit1.R’ Comparing ‘survfit1.Rout’ to ‘survfit1.Rout.save’ ... OK Running ‘survfit2.R’ Comparing ‘survfit2.Rout’ to ‘survfit2.Rout.save’ ... OK Running ‘survfit3.R’ Comparing ‘survfit3.Rout’ to ‘survfit3.Rout.save’ ... OK Running ‘survreg1.R’ Comparing ‘survreg1.Rout’ to ‘survreg1.Rout.save’ ... OK Running ‘survreg2.R’ Comparing ‘survreg2.Rout’ to ‘survreg2.Rout.save’ ... OK Running ‘survSplit.R’ Comparing ‘survSplit.Rout’ to ‘survSplit.Rout.save’ ... OK Running ‘survtest.R’ Comparing ‘survtest.Rout’ to ‘survtest.Rout.save’ ... OK Running ‘testci.R’ Comparing ‘testci.Rout’ to ‘testci.Rout.save’ ... OK Running ‘testci2.R’ Comparing ‘testci2.Rout’ to ‘testci2.Rout.save’ ... OK Running ‘testnull.R’ Comparing ‘testnull.Rout’ to ‘testnull.Rout.save’ ... OK Running ‘testreg.R’ Comparing ‘testreg.Rout’ to ‘testreg.Rout.save’ ... OK Running ‘tiedtime.R’ Comparing ‘tiedtime.Rout’ to ‘tiedtime.Rout.save’ ... OK Running ‘timeline.R’ Comparing ‘timeline.Rout’ to ‘timeline.Rout.save’ ... OK Running ‘tmerge.R’ Comparing ‘tmerge.Rout’ to ‘tmerge.Rout.save’ ... OK Running ‘tmerge2.R’ Comparing ‘tmerge2.Rout’ to ‘tmerge2.Rout.save’ ... OK Running ‘tmerge3.R’ Comparing ‘tmerge3.Rout’ to ‘tmerge3.Rout.save’ ... OK Running ‘tmerge4.R’ Comparing ‘tmerge4.Rout’ to ‘tmerge4.Rout.save’ ... OK Running ‘tt.R’ Comparing ‘tt.Rout’ to ‘tt.Rout.save’ ... OK Running ‘tt2.R’ Comparing ‘tt2.Rout’ to ‘tt2.Rout.save’ ... OK Running ‘turnbull.R’ Comparing ‘turnbull.Rout’ to ‘turnbull.Rout.save’ ... OK Running ‘update.R’ Comparing ‘update.Rout’ to ‘update.Rout.save’ ... OK Running ‘yates.R’ Running ‘yates0.R’ Comparing ‘yates0.Rout’ to ‘yates0.Rout.save’ ... OK Running ‘yates1.R’ Comparing ‘yates1.Rout’ to ‘yates1.Rout.save’ ... OK Running ‘yates2.R’ Comparing ‘yates2.Rout’ to ‘yates2.Rout.save’ ... OK Running ‘zph.R’ Comparing ‘zph.Rout’ to ‘zph.Rout.save’ ... OK OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'boot' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/boot.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:37:10 UTC * checking for file ‘boot/DESCRIPTION’ ... OK * this is package ‘boot’ version ‘1.3-32’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for differences from example reference output ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘parallel-censboot.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'cluster' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/cluster.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:37:35 UTC * checking for file ‘cluster/DESCRIPTION’ ... OK * this is package ‘cluster’ version ‘2.1.8.3’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘agnes-ex.R’ Comparing ‘agnes-ex.Rout’ to ‘agnes-ex.Rout.save’ ... OK Running ‘clara-ex.R’ Comparing ‘clara-ex.Rout’ to ‘clara-ex.Rout.save’ ... OK Running ‘clara-gower.R’ Running ‘clara-NAs.R’ Comparing ‘clara-NAs.Rout’ to ‘clara-NAs.Rout.save’ ... OK Running ‘clara.R’ Comparing ‘clara.Rout’ to ‘clara.Rout.save’ ... OK Running ‘clusplot-out.R’ Comparing ‘clusplot-out.Rout’ to ‘clusplot-out.Rout.save’ ... OK Running ‘daisy-ex.R’ Comparing ‘daisy-ex.Rout’ to ‘daisy-ex.Rout.save’ ... OK Running ‘diana-boots.R’ Running ‘diana-ex.R’ Comparing ‘diana-ex.Rout’ to ‘diana-ex.Rout.save’ ... OK Running ‘ellipsoid-ex.R’ Comparing ‘ellipsoid-ex.Rout’ to ‘ellipsoid-ex.Rout.save’ ... OK Running ‘fanny-ex.R’ Comparing ‘fanny-ex.Rout’ to ‘fanny-ex.Rout.save’ ... OK Running ‘mona.R’ Comparing ‘mona.Rout’ to ‘mona.Rout.save’ ... OK Running ‘pam.R’ Comparing ‘pam.Rout’ to ‘pam.Rout.save’ ... OK Running ‘silhouette-default.R’ Comparing ‘silhouette-default.Rout’ to ‘silhouette-default.Rout.save’ ... OK Running ‘sweep-ex.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'codetools' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/codetools.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:38:07 UTC * checking for file ‘codetools/DESCRIPTION’ ... OK * this is package ‘codetools’ version ‘0.2-20’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘tests.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'foreign' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/foreign.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:38:14 UTC * checking for file ‘foreign/DESCRIPTION’ ... OK * this is package ‘foreign’ version ‘0.8-91’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘arff.R’ Comparing ‘arff.Rout’ to ‘arff.Rout.save’ ... OK Running ‘download.R’ Running ‘minitab.R’ Comparing ‘minitab.Rout’ to ‘minitab.Rout.save’ ... OK Running ‘mval_bug.R’ Comparing ‘mval_bug.Rout’ to ‘mval_bug.Rout.save’ ... OK Running ‘octave.R’ Comparing ‘octave.Rout’ to ‘octave.Rout.save’ ... OK Running ‘S3.R’ Comparing ‘S3.Rout’ to ‘S3.Rout.save’ ... OK Running ‘sas.R’ Running ‘spss.R’ Comparing ‘spss.Rout’ to ‘spss.Rout.save’ ... 356c356 < $ factor_s_duplicated : Factor w/ 5 levels "A","ä","A_duplicated_b",..: 1 5 2 NA NA --- > $ factor_s_duplicated : Factor w/ 5 levels "A","A_duplicated_b",..: 1 5 4 NA NA 461c461 < $ string_500 : Factor w/ 4 levels " "| __truncated__,..: 2 1 4 1 3 --- > $ string_500 : Factor w/ 4 levels " "| __truncated__,..: 2 1 3 1 4 465c465 < $ factor_s_duplicated : Factor w/ 5 levels "A","ä","A_duplicated_b",..: 1 5 2 NA NA --- > $ factor_s_duplicated : Factor w/ 5 levels "A","A_duplicated_b",..: 1 5 4 NA NA Running ‘stata.R’ Comparing ‘stata.Rout’ to ‘stata.Rout.save’ ... OK Running ‘testEmpty.R’ Comparing ‘testEmpty.Rout’ to ‘testEmpty.Rout.save’ ... OK Running ‘writeForeignSPSS.R’ Comparing ‘writeForeignSPSS.Rout’ to ‘writeForeignSPSS.Rout.save’ ... OK Running ‘xport.R’ Comparing ‘xport.Rout’ to ‘xport.Rout.save’ ... OK NOTE * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/pd/r-devel/BUILD-test/tests/foreign.Rcheck/00check.log’ for details. checking package 'KernSmooth' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/KernSmooth.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:38:32 UTC * checking for file ‘KernSmooth/DESCRIPTION’ ... OK * this is package ‘KernSmooth’ version ‘2.23-27’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking usage of KIND in Fortran files ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘bkfe.R’ Running ‘locpoly.R’ OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'rpart' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/rpart.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:38:48 UTC * checking for file ‘rpart/DESCRIPTION’ ... OK * this is package ‘rpart’ version ‘4.1.27’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for differences from example reference output ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘backticks.R’ Comparing ‘backticks.Rout’ to ‘backticks.Rout.save’ ... OK Running ‘cost.R’ Comparing ‘cost.Rout’ to ‘cost.Rout.save’ ... OK Running ‘cptest.R’ Comparing ‘cptest.Rout’ to ‘cptest.Rout.save’ ... OK Running ‘minus_in_formula.R’ Comparing ‘minus_in_formula.Rout’ to ‘minus_in_formula.Rout.save’ ... OK Running ‘priors.R’ Comparing ‘priors.Rout’ to ‘priors.Rout.save’ ... OK Running ‘rescale.R’ Comparing ‘rescale.Rout’ to ‘rescale.Rout.save’ ... OK Running ‘testall.R’ Comparing ‘testall.Rout’ to ‘testall.Rout.save’ ... OK Running ‘treble.R’ Comparing ‘treble.Rout’ to ‘treble.Rout.save’ ... OK Running ‘treble2.R’ Comparing ‘treble2.Rout’ to ‘treble2.Rout.save’ ... OK Running ‘treble3.R’ Comparing ‘treble3.Rout’ to ‘treble3.Rout.save’ ... OK Running ‘treble4.R’ Comparing ‘treble4.Rout’ to ‘treble4.Rout.save’ ... OK Running ‘usersplits.R’ Comparing ‘usersplits.Rout’ to ‘usersplits.Rout.save’ ... OK Running ‘xpred1.R’ Comparing ‘xpred1.Rout’ to ‘xpred1.Rout.save’ ... OK Running ‘xpred2.R’ Comparing ‘xpred2.Rout’ to ‘xpred2.Rout.save’ ... OK OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'class' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/class.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:39:17 UTC * checking for file ‘class/DESCRIPTION’ ... OK * this is package ‘class’ version ‘7.3-24’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'nnet' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/nnet.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:39:32 UTC * checking for file ‘nnet/DESCRIPTION’ ... OK * this is package ‘nnet’ version ‘7.3-21’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'spatial' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/spatial.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:39:46 UTC * checking for file ‘spatial/DESCRIPTION’ ... OK * this is package ‘spatial’ version ‘7.3-19’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking examples ... OK * checking for differences from example reference output ... OK * checking PDF version of manual ... OK * DONE Status: OK checking package 'mgcv' * using log directory ‘/Users/pd/r-devel/BUILD-test/tests/mgcv.Rcheck’ * using R Under development (unstable) (2026-09-11 r90521) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.4.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.2 * using session charset: UTF-8 * current time: 2026-09-11 12:40:02 UTC * checking for file ‘mgcv/DESCRIPTION’ ... OK * this is package ‘mgcv’ version ‘1.9-4’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * skipping installation test * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... INFO Note: information on .o files is not available * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: OK real 17m9.737s user 10m34.575s sys 2m21.251s + exec