## Regression tests for R >= 4.3.0

.pt <- proc.time()
tryCid <- function(expr) tryCatch(expr, error = identity)
tryCmsg<- function(expr) tryCatch(expr, error = conditionMessage) # typically == *$message
assertErrV  <- function(...) tools::assertError  (..., verbose=TRUE)
assertWarnV <- function(...) tools::assertWarning(..., verbose=TRUE)
`%||%` <- function (L, R)  if(is.null(L)) R else L
##' get value of `expr` and keep warning as attribute (if there is one)
getVaW <- function(expr, obj=FALSE) {
    W <- NULL
    withCallingHandlers(val <- expr,
                        warning = function(w) {
                            W <<- if(obj) w else conditionMessage(w)
                            invokeRestart("muffleWarning") })
    structure(val %||% quote(._NULL_()), warning = W) # NULL cannot have attr.
}
options(nwarnings = 10000, # (rather than just 50)
        warn = 2, # only caught or asserted warnings
        width = 99) # instead of 80

onWindows <- .Platform$OS.type == "windows"
englishMsgs <- {
    ## 1. LANGUAGE takes precedence over locale settings:
    if(nzchar(lang <- Sys.getenv("LANGUAGE")))
        lang == "en"
    else { ## 2. Query the  locale
        if(!onWindows) {
            ## sub() :
            lc.msgs <- sub("\\..*", "", print(Sys.getlocale("LC_MESSAGES")))
            lc.msgs == "C" || substr(lc.msgs, 1,2) == "en"
        } else { ## Windows
            lc.type <- sub("\\..*", "", sub("_.*", "", print(Sys.getlocale("LC_CTYPE"))))
            lc.type == "English" || lc.type == "C"
        }
    }
}
cat(sprintf("English messages: %s\n", englishMsgs))


## very small size hashed environments
n <- 123
l <- setNames(vector("list", n), seq_len(n))
ehLs <- lapply(1:6, function(sz) list2env(l, hash=TRUE, size = sz))
(nch <- vapply(ehLs, \(.) env.profile(.)$nchains, 0))# gave  1 2 3 4 109 109
stopifnot(nch >= 24) # seeing  106 .. 106 111
## hashed environments did not grow for size <= 4 in  R <= 4.1.x


## as.character.Rd(deparse = TRUE) with curly braces in TEXT -- PR#18324
rd <- tools::parse_Rd(textConnection(txt0 <- r"(\link[=Paren]{\{})"),
                      fragment = TRUE)
cat(txt1 <- paste0(as.character(rd, deparse = TRUE), collapse = ""))
stopifnot(identical(paste0(txt0, "\n"), txt1))
## failed to re-escape curly brace in R <= 4.2.x
## curly braces used for grouping tokens are not escaped:
rdgroup <- tools::parse_Rd(textConnection(r"(a {b} c)"), fragment = TRUE)
stopifnot(identical(as.character(rdgroup, deparse = TRUE),
                    as.character(rdgroup, deparse = FALSE)))
##


## Errors from parsing (notably with |> ) now return *classed* errors with line numbers
## From  PR#18328 - by Duncan Murdoch
txts <- setNames(, c(
    "f <- function(x, x) {}"
  , "123 |> str"
  , "123 |> return()"
  , "123 |> `+`(_, 4)"
  , "123 |> (_ + 4)"
  , "123 |> f(a = _, b = _)"
  , "123 |> (\\(x) foo(bar = _))()"
  , "123 |> x => log(x)"
  , "'\\uh'"
  , "'\\Uh'"
  , "'\\xh'"
  , "'\\c'"
  , "'\\0'"
  , "'\\U{badf00d}"
  , "'\\Ubadf00d"
))
errs <- lapply(txts, function(ch) tryCatch(parse(text = ch), error=identity))
## nicely print them
msgs <- lapply(errs, `[[`, "message") ; str(msgs)
(cls <- t(sapply(errs, class)))
uerrs <- unname(errs) # (speed)
nL <- vapply(uerrs, `[[`, 0L, "lineno")
nC <- vapply(uerrs, `[[`, 0L, "colno")
stopifnot(exprs = {
    vapply(uerrs, inherits, NA, what = "error")
    vapply(uerrs, inherits, NA, what = "parseError")
    nL == 1L
    nC == c(18L, rep(8L, 6), 10L, rep(3L, 5), 12L, 10L)
    ## see all "<l>:<n>" strings as part of the message:
    mapply(grepl, paste(nL, nC, sep = ":"), msgs)
})
## gave just simpleError s; no line:column numbers in R <= 4.2.0


## fisher.test() with "too full" table:  PR#18336
d <- matrix(c(1,0,5,2,1,90
             ,2,1,0,2,3,89
             ,0,0,0,1,0,14
             ,0,0,0,0,0, 5
             ,0,0,0,0,0, 2
             ,0,0,0,0,0, 2
              ), nrow=6, byrow = TRUE)
(r <- tryCid(fisher.test(d)))
stopifnot(inherits(r, "error"))
if(englishMsgs)
    stopifnot(grepl("hash key .* > INT_MAX", conditionMessage(r)))
## gave a seg.fault in R <= 4.2.0


## Testing fix for PR#18344 [ tar() warning about illegal uid/gid ]:
sys <- Sys.info() # Only 'root' can create files with illegal uid/gid
if(sys[["sysname"]] == "Linux" & sys[["effective_user"]] == "root"
   ## not a "weakened root".  Or just && !nzchar(Sys.getenv("container")) :
   && !(Sys.getenv("container") %in% c("oci", "docker", "podman"))
   ) {
    dir.create(mdir <- file.path(tempdir(),"stuff"))
    for(f in letters[1:3])
        writeLines("first line", file.path(mdir, f))
    owd <- setwd(tempdir())
    system(paste("chown 654321 stuff/a")) ## system(paste("chgrp 123456 stuff/b"))
    r <- tryCatch( tar('stuff.tar', "stuff"), warning = identity)
    stopifnot(inherits(r, "warning"))
    if(englishMsgs)
        stopifnot(grepl("^invalid uid ", conditionMessage(r)))
    ## cat("Inside directory ", getwd(),":\n"); system("ls -l stuff.tar")
    setwd(owd)# go back
} else
    message("You are not root, hence cannot change uid / gid to invalid values")
## gave 2 warnings per wrong file; the first being    In sprintf(gettext(....):
##    "one argument not used by format 'invalid uid value replaced .... 'nobody''"


## sort(x, partial, *) notably for na.last=FALSE and TRUE -- PR#18335
chkSortP <- function(x, partial) {
    stopifnot(partial == as.integer(partial),
              1 <= partial, partial <= length(x))
    nok <- sum(!is.na(x))
    if(anyNA(x) && any(partial > nok)) ## cannot use na.last=NA
         Ls <- c(   FALSE,TRUE)
    else Ls <- c(NA,FALSE,TRUE)
    S <- lapply(Ls, function(v) sort(x, na.last=v))
    P <- lapply(Ls, function(v) sort(x, na.last=v, partial=partial))
    ok1 <- identical(lapply(S, `[`, partial),
                     lapply(P, `[`, partial))
    ## test "ones below" and "ones above" the (min and max) partials
    mip <- min(partial)
    map <- max(partial)
    noNA <- function(u) u[!is.na(u)]
    chkPord <- function(y) {
        n <- length(y)
        all(noNA(y[if(mip > 1) 1L:(mip-1L)]) <= noNA(y[mip])) &&
        all(noNA(y[if(map < n)  (map+1L):n]) >= noNA(y[map]))
    }
    ok1 && all(vapply(P, chkPord, logical(1)))
}

x <- c(7, 2, 4, 5, 3, 6, NA)
x1 <- c( 2,3,1, NA)
x2 <- c(NA,3,1, NA)
x14 <- c(7, 2, 0, 8, -1, -2, 9, 4, 5, 3, 6, 1, NA,NA)
stopifnot(exprs = {
    chkSortP(x, partial = 3)
    chkSortP(x, partial = c(3,5))
    chkSortP(x1, partial = 3)
    chkSortP(x1, partial = 4)
    chkSortP(x1, partial = 3:4)
    chkSortP(x2, partial = 4)
    chkSortP(x2, partial = 3)
    chkSortP(x2, partial = 2:4)
    sapply(seq_along(x14), function(p) chkSortP(x14, partial = p))
    chkSortP(x14, partial = c(10, 13))
    chkSortP(x14, partial = c(2, 14))
})
set.seed(17)
for(i in 1:128) { # tested for 1:12800
    x <- runif(rpois(1, 100))
    x[sample(length(x), 12)] <- NA
    p <- sample(seq_along(x), size = max(1L, rpois(1, 3)))
    stopifnot(chkSortP(x, partial = p))
}
## several of these failed for na.last=FALSE and TRUE


## head(letters, "7") should not silently do nonsense; PR#18357
assertErrV( head(letters, "3") )
## returned complete 'letters' w/o a warning
stopifnot(identical("a", head(letters, TRUE)))
## keep treating <logical> n  as integer


## x[[]] should give error in all cases, even for NULL;  PR#18367
(E <- tryCid(c(a = 1, 2)[[]]))
xx <- c(a = 1, 2:3)
E2 <- tryCid(xx[[]])
EN <- tryCid(NULL[[]]) # <=> c()[[]]
stopifnot(exprs = {
    inherits(E, "error")
    inherits(E, "MissingSubscriptError")
    identical(quote(c(a = 1, 2)[[]]), E$call)
    identical(class(E), class(E2))
    identical(class(E), class(EN))
    identical(msg <- "missing subscript", conditionMessage(E2))
    identical(msg, conditionMessage(EN))
    (nm <- c("call","object")) %in% names(EN)
    identical(EN[nm], list(call = quote(NULL[[]]), object = NULL))
})
## [[]]  matched '2' as which has name ""
E <- tryCid(xx[[]] <- pi)
stopifnot(inherits(E, "MissingSubscriptError"))
## using new error class


## PR#18375, use PRIMNAME not *VAL in message:
(M <- tryCmsg(date > 1))
stopifnot(grepl("(>)", M, fixed=TRUE))
## showed '(6)' previously


## isGeneric() with wrong name -- correct warning msg (PR#18370)
setGeneric("size", function(x) standardGeneric("size"))
tryCatch(stopifnot(!isGeneric("haha", fdef = size)),
         warning = conditionMessage) -> msg
msg; if(englishMsgs)
    stopifnot(grepl("name .size. instead of .haha.", msg))
## msg was confusing


### poly(<Date>,*) etc:  lm(... ~ poly(<Date>, .)) should work :
d. <- data.frame(x = (1:20)/20, f = gl(4,5), D = .Date(17000 + c(1:7, 1:13 + 100)))
cf0 <- c(Int=100, x=10, f = 5*(1:3))
nD <- as.numeric(d.[,"D"])
y0 <- model.matrix(~x+f, d.) %*% cf0  +   10*(nD - 17000) - 20*((nD - 17000)/10)^2
set.seed(123)
head(d. <- cbind(d., y = y0 + rnorm(20)))
fm1  <- lm(y ~ x + f + poly(D,3), data = d.)
fm1r <- lm(y ~ x + f + poly(D,2, raw=TRUE), data = d.)
newd <- data.frame(x = seq(1/3, 1/2, length=5), f = gl(4,5)[5:9], D = .Date(17000 + 51:55))
yhat <- unname(predict(fm1,  newdata = newd))
yh.r <- unname(predict(fm1r, newdata = newd))
cbind(yhat, yh.r)
stopifnot(all.equal(yhat, c(96.8869, 92.3821, 81.9967, 71.2076, 60.0147), tol=1e-6), # 3e-7
          all.equal(yh.r, c(97.7595, 93.0218, 82.3533, 71.2806, 59.8036), tol=1e-6))
## poly(D, 3) failed since R 4.1.x,  poly(.., raw=TRUE) in all earlier R versions


## as.difftime() tweaks: coerce to "double", keep names
stopifnot(
    identical(as.difftime(c(x = 1L), units="secs"),
                .difftime(c(x = 1.), units="secs")))
## integers where kept (and difftime arithmetic could overflow) in R <= 4.2.x


## ordered() with missing 'x' -- PR#18389
factor( levels = c("a", "b"), ordered=TRUE) -> o1
ordered(levels = c("a", "b")) -> o2
stopifnot(identical(o1,o2))
## the ordered() call has failed in R <= 4.2.x


## multi-line Rd macro definition
rd <- tools::parse_Rd(textConnection(r"(
\newcommand{\mylongmacro}{
  \LaTeX
}
\mylongmacro
)"), fragment = TRUE)
tools::Rd2txt(rd, out <- textConnection(NULL, "w"), fragment = TRUE)
stopifnot(any(as.character(rd) != "\n"),
          identical(textConnectionValue(out)[2L], "LaTeX")); close(out)
## empty output in R <= 4.2.x



## expand.model.frame() for non-data fits (PR#18414)
y <- 1:10
g <- gl(2, 5)
fit <- lm(log(y) ~ g, subset = y > 3)
mf <- expand.model.frame(fit, ~0)
stopifnot(all.equal(fit$model, mf, check.attributes = FALSE))
myexpand <- function(model) expand.model.frame(model, "y")
stopifnot(identical(myexpand(fit)$y, 4:10))  # failed in R <= 1.4.1 (PR#1423)
env <- list2env(list(y = y, g = g))
rm(y, g)
fit2 <- with(env, lm(log(y) ~ g, subset = y > 3))
stopifnot(identical(myexpand(fit2)$y, 4:10)) # failed in R <= 4.2.1 with
## Error in eval(predvars, data, env) : object 'y' not found


## time() returning numbers very slightly on the wrong side of an integer
x <- ts(2:252, start = c(2002, 2), freq = 12)
true.year <- rep(2002:2022, each = 12)[-1]
stopifnot(floor(as.numeric(time(x))) == true.year)
## seen 10 differences in R <= 4.2.x


## Sorted printing of factor analysis loadings with 1 factor, PR#17863
f1 <- factanal(d <- mtcars[,1:4], factors = 1) ; print(f1, sort=TRUE)
prl <- capture.output(print(loadings(f1), sort=TRUE))
stopifnot(identical(1:4, charmatch(colnames(d),
                                   prl[charmatch("Loadings", prl)+ 1:4+1L])))
## printed these as vector instead of 1-column matrix in R <= 4.2.x


## print() of zero - length, PR#18422
i0 <- integer(0)
stopifnot(exprs = {
    identical("<0-length octmode>", capture.output(as.octmode(i0)))
    identical("<0-length hexmode>", capture.output(as.hexmode(i0)))
    identical("<0-length roman>",   capture.output(as.roman  (i0)))
    identical("person()",           capture.output(    person()))
    identical("bibentry()",         capture.output(  bibentry()))
    identical("<0-length citation>",capture.output(  citation()[0L]))
})
## printed nothing at all or invalid R-code in R <= 4.2.x


## isS3method() for names starting with a dot
stopifnot(!isS3method(".Internal"))
## failed with "invalid first argument" in R <= 4.2.x


## cor.test.formula() scoping issue -- PR#18439
form <- ~ CONT + INTG
local({
    USJudgeRatings <- head(USJudgeRatings)
    stopifnot(cor.test(form, data = USJudgeRatings)$parameter == 4)
})
## R <= 4.2.x evaluated the constructed call in environment(formula)


## PR # 18421 by Benjamin Feakins (and follow up):
## ---------- "roman", "hexcode" and "octcode" all cannot easily be added to data frames
for(x in list(as.roman(1:14), as.octmode(1:11), as.hexmode(1:19), as.raw(0:65), (0:17) %% 7 == 0,
              as.difftime(c(0,30,60:64), units="mins"),
              seq(ISOdate(2000,2,10), by = "23 hours", length.out = 50)
 )) {
  cat("x:"); str(x, vec.len=8)
  ## the error can be triggered by the following methods:
  ### 1. as.data.frame()
  dat1 <- as.data.frame(x) # now works, previously signalled
  ## Error in as.data.frame.default(x) :
  ##   cannot coerce class ‘"roman"’ to a data.frame
  ### 2. data.frame()
  dat2 <- data.frame(x) # gave error as above, now works
  stopifnot(identical(dat1, dat2),
            identical(   data.frame(my.x = x),
                      as.data.frame(x, nm="my.x")))
  ### 3. cbind()
  dat3 <- data.frame(y = seq_along(x))
  dat3 <- cbind(dat3, x) # gave error, now works
  stopifnot(identical(dat2, dat3[,"x", drop=FALSE]))
  ## These worked already previously:
  dat <- data.frame(x = integer(length(x)))
  dat$x <- x
  datl <- list2DF(list(x=x))
  stopifnot(identical(dat, dat2),
            identical(dat, datl))
}
## --- such data.frame() coercions gave errors in R <= 4.2.x


## Deprecation of {direct calls to}  as.data.frame.<cls>()
cls <- c("raw", "logical", "integer", "numeric", "complex",
         "factor", "ordered", "Date", "difftime", "POSIXct",
         "noquote", "numeric_version")
names(cls) <- cls
be <- baseenv()
asF  <- lapply(cls, \(cl) be[[paste0("as.",cl)]] %||% be[[cl]])
## objects of the respective class:
obs  <- lapply(cls, \(cl) asF[[cl]](switch(cl, "difftime" = "2:1:0", "noquote" = letters,
                                           "numeric_version" = as.character(1:2), 1:2)))
asDF <- lapply(cls, \(cl) getVaW(be[[paste0("as.data.frame.", cl)]](obs[[cl]])))
r <- local({ g <- as.data.frame.logical; f <- function(L=TRUE) g(L)
    getVaW(f()) })
dfWarn <- "deprecated.*as\\.data\\.frame\\.vector"
stopifnot(exprs = {
    vapply(obs, \(.) class(.)[1], "") == cls
    vapply(asDF, is.data.frame, NA)
    ## the first column of each data frame is of the original class:
    vapply(lapply(asDF, `[[`, 1), \(.) class(.)[1], "") == cls
    ## all should have a deprecation warning
    is.character(asDwarn <- vapply(asDF, attr, "<text>", "warning"))
    !englishMsgs || all(grepl(dfWarn, asDwarn))
    length(unique(vapply(cls, \(cl) sub(cl, "<class>", asDwarn[[cl]], fixed=TRUE), ""))) == 1L
    all.equal(r, data.frame(L=TRUE), check.attributes=FALSE)
    !englishMsgs || grepl(dfWarn, attr(r, "warning"))
})
## as.data.frame.<cls>(.) worked w/o deprecation warning in R <= 4.2.x

## useMethod() dispatch error in case of long class strings - PR#18447
mkCh <- function(n, st=1L) substr(strrep("123456789 ", ceiling(n/10)), st, n)
useMethErr <- function(n=500, nrep=25)
    (function(.) UseMethod("foo")(.))(
        structure(1, class = paste(sep=":", format(1:nrep),
                                   mkCh(n, 2L + (nrep > 9)))))
tools::assertError( useMethErr(500,25) )
## gave a segfault  in R <= 4.2.2
clsMethErr <- function(...) {
 sub(    '"[^"]*$', "",
     sub('^[^"]*"', "", tryCmsg(useMethErr(...))))
}
showC <- function(..., n1=20, n2=16) {
    r <- clsMethErr(...)
    cat(sprintf('%d: "%s<....>%s"\n', (nr <- nchar(r)),
                substr(r, 1,n1), substr(r, nr-n2, nr)))
    invisible(r)
}
invisible(lapply(11:120, function(n) showC(n, 1030 %/% n)))
## (mostly the truncation works "nicely", but sometimes even misses the closing quote)


## download.file() with invalid option -- PR#18455
op <- options(download.file.method = "no way")
# website does not matter as will not be contacted.
Edl <- tryCid(download.file("http://cran.r-project.org/", "ping.txt"))
stopifnot(inherits(Edl, "error"),
          !englishMsgs || grepl("should be one of .auto.,", conditionMessage(Edl)))
options(op)
## error was  "object 'status' not found"  in R <= 4.2.2


## handling of invalid Encoding / unsupported conversion in packageDescription()
dir.create(pkgpath <- tempfile())
writeLines(c(sprintf("Package: %s", basename(pkgpath)),
             "Version: 1.0", "Encoding: FTU-8"), # (sic!)
           file.path(pkgpath, "DESCRIPTION"))
stopifnot(suppressWarnings(packageVersion(basename(pkgpath),
                                          dirname(pkgpath))) == "1.0")
## outputs try()-catched iconv() errors but does not fail
## gave a "packageNotFoundError" in 3.5.0 <= R <= 4.2.2


## format.bibentry() with preloaded Rd macros
ref <- bibentry("misc", author = "\\authors", year = 2023)
macros <- tools::loadRdMacros(textConnection("\\newcommand{\\authors}{\\R}"))
stopifnot(identical(print(format(ref, macros = macros)), "R (2023)."))
## macro definitions were not used in R <= 4.2.2


## predict.lm() environment used for evaluating offset -- PR#18456
mod <- local({
     y <- rep(0,10)
     x <- rep(c(0,1), each=5)
     list(lm(y ~ x),
          lm(y ~ offset(x)))
})
stopifnot(exprs = {
    ## works fine, using the x variable of the local environment
    identical(predict(mod[[1]], newdata=data.frame(z=1:10)),
              setNames(rep(0,10), as.character(1:10)))
    ## gave  error in offset(x) : object 'x' not found :
    identical(predict(mod[[2]], newdata=data.frame(z=1:10)),
              setNames(rep(c(-.5,.5), each=5), as.character(1:10)))
})
x <- rep(1,5)
mod2 <- local({
    x <- rep(2,5) # 2, not 1
    y <- rep(0,5)
    lm(rep(0,5) ~ x + offset({ print("hello"); x+2*y }),
       offset = { print("world"); x-y })
}) # rank-deficient in "subtle" way {warning/NA may not be needed}; just show for now:
nd <- data.frame(x = 1:5)
assertWarnV(print(predict(mod2, newdata=nd, rankdeficient = "warnif")))
                  predict(mod2, newdata=nd, rankdeficient = "NA") # NA's but no warning
nm5 <- as.character(1:5)
stopifnot(exprs = {
    all.equal(setNames(rep(0, 5), nm5), predict(mod2), tol=1e-13) # pred: 1.776e-15
    is.numeric(p2 <- predict(mod2, newdata = data.frame(y=rep(1,5)))) # no warning, no NA:
    identical(p2,    predict(mod2, newdata = data.frame(y=rep(1,5)), rankdeficient="NA"))
    all.equal(p2, setNames(rep(1, 5), nm5), tol=1e-13)# off.= x+2y + x-y = 2x+y =4+1=5; 5+<intercept> = 1
})
## fine, using model.offset() now


## "numeric_version" methods
x <- numeric_version(c("1", "2.0"))
stopifnot(identical(format(x[,2]), c(NA_character_, "0")))
is.na(x)[1] <- TRUE; stopifnot(identical(is.na(x), c(TRUE, FALSE)))
## gave two spurious warnings in R <= 4.2.2


mChk <- function(m) stopifnot(exprs = {
    identical(attributes(m), list(dim=2:3))
    identical(class(m), c("matrix", "array"))
})
(m <- m0 <- diag(1:3, 2,3))
mChk(m)
##
class(m) <- "matrix"  # instead of c("matrix", "array") ...
mChk(m); stopifnot(identical(m, m0))# .. m is *unchanged* - back compatibly
## since R 4.0.0,
class(m) # is  "matrix" "array"
class(m) <- class(m) # should *not* change 'm'
mChk(m); stopifnot(identical(m, m0))# m is unchanged as it should, but
## failed in R version v  4.0.0 <= v <= 4.2.x : 'm' got a class *attribute* there.


## uniroot() close to Inf function values could wrongly converge outside interval
f <- function(x) 4469/x - 572/(1-x)
str(urf <- uniroot(f, c(1e-6, 1))) # interval = (eps, 1]; f(1) = Inf
stopifnot(all.equal(urf$root, 0.88653, tolerance = 1e-4))
## Instead of 0.886.., gave a small *negative* root in R < 4.3.0


## chkDots() in subset.data.frame() to prevent usage errors
assertWarnV(subset(data.frame(y = 1), y = 2))
## R < 4.3.0 was silent about unused ... arguments


## a:b -- both should be of length 1  -- PR#18419
Sys.getenv("_R_CHECK_LENGTH_COLON_") -> oldV
Sys.setenv("_R_CHECK_LENGTH_COLON_" = "true")# ~> the future behavior
a <- 1:2
assertErrV(a:1) # numerical expression has length > 1
assertErrV(2:a) #  "         "          "      "
Sys.unsetenv("_R_CHECK_LENGTH_COLON_")
assertWarnV(s1 <- a:1)
assertWarnV(s2 <- 2:a)
stopifnot(identical(s1, 1L), identical(s2, 2:1))
Sys.setenv("_R_CHECK_LENGTH_COLON_" = oldV)# reset
## always only warned in R <= 4.2.z


## keep rm(list=NULL) working (now documentedly) {PR#18422}
a <- ls() # 'a' is part
rm() ; rm(list=NULL)
stopifnot(identical(a, ls()))
## (for a short time, list=NULL failed)


## ns() fails when quantiles end on the boundary {PR#18442}
if(no.splines <- !("splines" %in% loadedNamespaces())) require("splines")
tt <- c(55, 251, 380, 289, 210, 385, 361, 669)
nn <- rep(0:7, tt) # => knots at (0.25,0.5,0.75); quantiles = (2,5,7)
tools::assertWarning(verbose=TRUE, ns.n4 <- ns(nn,4))
stopifnot(is.matrix(ns.n4), ncol(ns.n4) == 4, qr(ns.n4)$rank == 4)
if(no.splines) unloadNamespace("splines")
## ns() gave  Error in qr.default(t(const)) : NA/NaN/Inf in foreign function call


## Krylov's issue with sum(), min(), etc on R-devel: Now errors instead of silently computing:
mT <- tryCid( sum(3,4,na.rm=5, 6, NA, 8, na.rm=TRUE) )
mF <- tryCid( min(3,4,na.rm=5, 6, NA, 8, na.rm=FALSE) )
stopifnot(inherits(mT, "error"),
          inherits(mF, "error"), all.equal(mT, mF))
if(englishMsgs)
    stopifnot(grepl("formal argument \"na.rm\" matched by multiple", conditionMessage(mT)))
## these gave numeric (or NA) results without any warning in R <= 4.3.z


## as.complex(NA_real_) |-> ... Im(.) == 0 as for NA (logical) and NA_integer_
if(FALSE) # in R-devel Apr--Sep 2023 only:
stopifnot(identical(as.complex(NA_real_), NA_complex_))
Cmplx <- function(re = numeric(), im = numeric()) complex(real = re, imaginary = im)
showC <- function(z) noquote(sprintf("(R = %g, I = %g)", Re(z), Im(z)))
showC(print(asCnum <- Cmplx(NA_real_, 0)))
showC(print(NA_rP0i <- NA_real_ + 0i)) # arithmetic here via as.complex(.)
stopifnot(exprs = {
    identical(as.complex(NA_real_),    asCnum)
    identical(as.complex(NA_integer_), asCnum)
    identical(as.complex(NA),          asCnum)
    identical(NA_rP0i,                 asCnum)
    identical(as.complex( NaN), Cmplx(NaN, 0))
    identical(as.complex( Inf), Cmplx(Inf, 0))
    identical(as.complex(-Inf),Cmplx(-Inf, 0))
})
## as.complex( <real-number-like> ) keeps imaginary part 0 even for NA


## methods() in {base} pkg are visible
mmeths <- methods(merge)
imeth <- attr(mmeths, "info")
stopifnot(exprs = {
    sum(iB <- imeth[,"from"] == "base") >= 2 # 'default' and 'data.frame'
    imeth[iB, "visible"] # {base} methods *are* visible
})
## was wrong in R 4.3.0 (and R-devel for a while)


## Methods of a non-generic function
foo <- function(x) { bar(x) }
(m <- methods(foo))
stopifnot(inherits(m, "MethodsFunction"), length(m) == 0L)
## .S3methods() failed in R-devel for a few days after r84400.


## getS3method() error
myFUN <- function(x) UseMethod("myFUN")
(msg <- tryCmsg(getS3method("myFUN", "numeric")))
if(englishMsgs)
    stopifnot(grepl("S3 method 'myFUN.numeric' not found", msg))
## failed with "wrong" message after r84400


## head(.,n) / tail(.,n) error reporting - PR#18362
try(head(letters, 1:2)) # had "Error in checkHT(..)"); now ".. in head.default(..)"
try(tail(letters, NA))
try(head(letters, "1"))
tryCcall1 <- function(expr) tryCid(expr)$call[[1L]]
stopifnot(exprs = {
    tryCcall1(head(letters, 1:2)) == quote(head.default)
    tryCcall1(tail(letters, NA )) == quote(tail.default)
    tryCcall1(head(letters, "1")) == quote(head.default)
})
## more helpful error msg


## na.contiguous() w/ result at beginning -- Georgi Boshnakov, R-dev, 2023-06-01
## and does not set "tsp" for non-ts
x <- c(1:3, NA, NA, 6:8, NA, 10:12)
(naco <- na.contiguous(      x ))
(nact <- na.contiguous(as.ts(x)))
dput( setdiff(attributes(nact), attributes(naco)) ) # and check -- TODO
n0 <- numeric(0)
stopifnot(identical(`attributes<-`(naco, NULL), 1:3)
        , identical(na.contiguous(n0), n0)
        , is.null(attr(naco, "tsp"))
        , nact == naco
        , identical(c(na.contiguous(presidents)), presidents[32:110])
          )
## 'naco' gave *2nd*, not *first* run till R 4.3.0


## accidental duplicated options() entry
if(i <- anyDuplicated(no <- names(ops <- options())))
    stop("duplicated options(): ", no[i])
## had one in R 4.3.0 (and R-devel)


## .S3methods() and methods() in  R 4.3.0
library(stats)# almost surely unneeded
##
methi <- function(...) attr(methods(...), "info")
(mdensi <- methi(density)) # only density.default
stopifnot(mdensi["density.default", "visible"]) # FALSE in R 4.3.0
if(requireNamespace('cluster', lib.loc=.Library, quietly = TRUE)) withAutoprint({
    try(detach("package:cluster"), silent=TRUE)# just in case
    (mCf1 <- methi(coef))

    require(cluster)
    (mCf2 <- methi(coef))
    stopifnot(mCf2["coef.hclust", "visible"],
              mCf2["coef.hclust", "from"] == "cluster")
    ## ... and
    detach("package:cluster")
    (mcf <- methods(coef)) # again gets marked as invisible:  coef.hclust*
    stopifnot(!attr(mcf, "info")["coef.hclust", "visible"])
}) # when  {cluster}
## in any case {and "always" worked}:
coef.foo <- function(object, ...) "the coef.foo() method"
(m3 <- methi(coef))# -> coef.foo is visible in .GlobalEnv
stopifnot(m3["coef.foo", "visible"],
          m3["coef.foo", "from"] == ".GlobalEnv")
## *and* this is still true, after registering it:
.S3method("coef", "foo", coef.foo)
stopifnot(identical(methi(coef), m3)) # did not change
rm(coef.foo)
m4 <- methi(coef)
stopifnot(!m4["coef.foo", "visible"],
           m4["coef.foo", "from"] == "registered S3method for coef")
## coef.foo  part  always worked


## R <= 4.3.z would split into two invalid characters (PR#18546)
splitmbcs <- length(strsplit("\u00e4", "^", perl=TRUE)[[1]])
stopifnot(identical(splitmbcs, 1L))


## contrib.url() should "recycle0"
stopifnot(identical(contrib.url(character()), character()))
## R <= 4.3.1 returned "/src/contrib" or similar


## .local() S4 method when generic has '...'  *not* at end, PR#18538
foo <- function(x, ..., z = 22) z
setMethod("foo", "character", function(x, y = -5, z = 22) y)
stopifnot(identical(foo("a"), -5))
removeGeneric("foo")
## foo("a") gave 22 in R <= 4.3.z


## `substr<-` overrun in case of UTF-8 --- private bug report by 'Architect 95'
s0 <- "123456"; nchar(s0) #  6
substr(s0, 6, 7) <- "cc"
s0 ; nchar(s0) # {"12345c", 6}: all fine: no overrun, silent truncation
(s1 <- intToUtf8(c(23383, 97, 97, 97, 97, 97))); nchar(s1)  # "字aaaaa" , 6
substr(s1, 6, 7) <- "cc"
# Now s1 should be "字aaaac", but actually did overrun nchar(s1);
s1; nchar(s1) ## was "字aaaacc", nchar  = 7
(s2 <- intToUtf8(c(23383, 98, 98))); nchar(s2)  # "字bb" 3
substr(s2, 4, 5) <- "dd" # should silently truncate as with s0:
## --> s2 should be "字bb", but was "字bbdddd\x97" (4.1.3) or "字bbdd字" (4.3.1)
s2; nchar(s2) ## was either 6 or  "Error ... : invalid multibyte string, element 1"
#-------------
## Example where a partial UTF-8 character is included in the second string
## 3) all fine
(s3 <- intToUtf8(c(23383, 97, 97, 97, 97, 97))); nchar(s3)  # "字aaaaa" 6
substr(s3, 6, 6) <- print(intToUtf8(23383))  # "字"
s3 ; nchar(s3) # everything as expected:  ("字aaaa字", 6)
## 4) not good
(s4 <- intToUtf8(c(23383, 98, 98, 98, 98))); nchar(s4) # "字bbbb" 5
substr(s4, 5, 7) <- "ddd"
# Now s4 should be "字bbbd", but was "字bbbddd\x97", (\x97 = last byte of "字" in UTF-8)
s4; nchar(s4)## gave "字bbbddd\x97" and "Error ...: invalid multibyte string, element 1"
stopifnot(exprs = {
    identical(s0, "12345c") # always ok
    identical(utf8ToInt(s1), c(23383L, rep(97L, 4), 99L))           ; nchar(s1) == 6
    identical(utf8ToInt(s2), c(23383L, 98L, 98L))                   ; nchar(s2) == 3
    identical(utf8ToInt(s3), c(23383L, 97L, 97L, 97L, 97L, 23383L)) ; nchar(s3) == 6
    identical(utf8ToInt(s4), c(23383L, 98L, 98L, 98L, 100L))        ; nchar(s4) == 5
    Encoding(c(s1,s2,s3,s4)) == rep("UTF-8", 4)
})
## did partly overrun to invalid strings, nchar(.) giving error in R <= 4.3.1


## PR#18555 : see ---> ./misc-devel.R


## PR#18557 readChar() with large 'nchars'
ch <- "hello\n"; tf <- tempfile(); writeChar(ch, tf)
tools::assertWarning((c2 <- readChar(tf, 4e8)))
stopifnot(identical(c2, "hello\n"))
## had failed w/   cannot allocate memory block of size 16777216 Tb


## Deprecation of *direct* calls to as.data.frame.<someVector>
dpi <- as.data.frame(pi)
d1 <- data.frame(dtime = as.POSIXlt("2023-07-06 11:11")) # gave F.P. warning
r <- lapply(list(1L, T=T, pi=pi), as.data.frame)
stopifnot(is.list(r), is.data.frame(d1), inherits(d1[,1], "POSIXt"), is.data.frame(r$pi), r$pi == pi)
stopifnot(local({adf <- as.data.frame; identical(adf(1L),(as.data.frame)(1L))}))
## Gave 1 + 3 + 2  F.P. deprecation warnings in 4.3.0 <= R <= 4.3.1
str(d2 <- mapply(as.data.frame, x=1:3, row.names=letters[1:3]))
stopifnot(is.list(d2), identical(unlist(unname(d2)), 1:3))
## gave Error .. sys.call(-1L)[[1L]] .. comparison (!=) is possible only ..
##
## Should not warn for a call from a derivedDefaultMethod to the
## raw S3 method -- implementation detail of S4 dispatch
setGeneric('as.data.frame')
as.data.frame(factor(1))
removeGeneric('as.data.frame')
## wrongly gave  " Direct call of 'as.data.frame.factor()' is deprecated. "


## qqplot(x,y, *) confidence bands for unequal sized x,y, PR#18570:
x <- (7:1)/8; y <- (1:63)/64
r <- qqplot(x,y, plot.it=FALSE, conf.level = 0.90)
r2<- qqplot(y,x, plot.it=FALSE, conf.level = 0.90)
(d <- 64 * as.data.frame(r)[,3:4])
stopifnot(identical(d, data.frame(lwr = c(NA, NA, NA, 6, 15, 24, 33),
                                  upr = c(31, 40, 49, 58, NA, NA, NA))),
          identical(8 * as.data.frame(r2[3:4]),
                    data.frame(lwr = c(NA,NA,NA, 1:4 +0), upr = c(4:7 +0, NA,NA,NA))))
## lower and upper confidence bands were nonsensical in R <= 4.3.1


## New <object> type {{partly experimental}}
mkObj <- function(...) {
    ob <- asS3(getClass("S4")@prototype, complete=FALSE) # "hack"
    if(...length()) attributes(ob) <- list(...)
    ob
}
(oo <- mkObj())
str(oo) # the same: '<object>'
(x4 <- asS4(oo))
dput(x4) # same as print(.)
dput(oo) # <object> again {possibly to be changed}
(o2 <- mkObj(name = "Obi", age = 67))
str(o2) # good!
dput(o2) # <object>  .. to be changed -- once something like mkObj() becomes API
stopifnot(exprs = {
    identical(x4, getClass("S4")@prototype)
    identical(oo, get("oo", mode="object"))
    identical(x4, get("x4", mode="S4"))
    identical(attr(o2, "name"), "Obi")
})
assertErrV(o2[ 1 ])
assertErrV(o2[[1]])

stopifnot(isFALSE(inherits(oo, "S4")))
stopifnot(isTRUE(inherits(oo, "object")))
stopifnot(isTRUE(inherits(x4, "S4")))
stopifnot(isFALSE(inherits(x4, "object")))
assertErrV(get("oo", .GlobalEnv, mode = "S4"))
stopifnot(identical(get("oo", .GlobalEnv, mode = "object"), oo))
stopifnot(identical(get("x4", .GlobalEnv, mode = "S4"), x4))
assertErrV(get("x4", .GlobalEnv, mode = "object"))
assertErrV(get("oo", mode = "integer"))
assertErrV(get("x4", .GlobalEnv, mode = "integer"))


## kappa(), rcond() [& norm()] -- new features and several bug fixes, PR#18543:
(m <- rbind(c(2, 8, 1),
            c(6, 4, 3),
            c(5, 7, 9)))
## 1) kappa(z=<n-by-n>, norm="1", method="direct")` ignores lower triangle of z
km1d <- kappa(m, norm = "1", method = "direct")
all.equal(km1d, 7.6, tol=0) # 1.17e-16  {was wrongly 11.907 in R <= 4.3.1}
## 2) kappa(z, norm="2", LINPACK=TRUE) silently returns estimate of the *1*-norm cond.nr.
(km1 <- kappa(m, norm = "1")) # 4.651847 {unchanged}
assertWarnV( km2L <- kappa(m, norm="2", LINPACK=TRUE)) # now *warns*
## 3) kappa(z, norm="2", LINPACK=FALSE) throws an error
assertWarnV(km2La <- kappa(m, norm="2", LINPACK=FALSE))# same warning (1-norm instead of 2-)
km2La
## 4) kappa.qr(z) implicitly assumes nrow(z$qr) >= ncol(z$qr), not true in general
(kqrm2 <- kappa(qr(cbind(m, m + 1))))
## Error in .kappa_tri(R, ...) : triangular matrix should be square
## 5) rcond(x=<n-by-n>, triangular=TRUE) silently ignores the lower (rather than upper)
##                                      triangle of `x`, contradicting `help("rcond")`.
## ==> Fixing help page; but *also* adding  uplo = "U"  argument
all.equal(4/65, (rcTm <- rcond(m, triangular=TRUE)),         tol = 0) # {always}
all.equal(9/182,(rcTL <- rcond(m, triangular=TRUE, uplo="L")), tol=0) # 1.4e-16
##
## New features, can use norm "M" or "F" for exact=TRUE via  norm(*, type=<norm>)
(kM <- kappa(m, norm="M", exact = TRUE)) # 2.25     "M" is allowed type for norm()
(kF <- kappa(m, norm="F", exact = TRUE)) # 6.261675 "F" is allowed type for norm()
all.equal(6.261675485, kF, tol=0) # 2.81e-11
stopifnot(exprs = {
    all.equal(4.6518474224, km1)
    km1 == kappa(m) # same computation
    km1 == kappa(qr.R(qr(m))) # "
    all.equal(km1d, 7.6, tol = 1e-15)
    km1d == kappa(m, method = "direct") # identical computation {always ok}
    identical(km2L, km1)
    all.equal(km2La, 5.228678219)
    all.equal(kqrm2, km1) # even identical
    rcTm == rcond(m, triangular=TRUE, uplo = "U") # uplo="U" was default always
    all.equal(4/65,  rcTm, tol = 1e-14)
    all.equal(9/182, rcTL, tol = 1e-13)
    1/rcond(m) == km1d # same underlying Lapack code
    ## 6) kappa(z=<m-by-0>) throws bad errors due to 1:0 in kappa.qr():
    kappa(m00 <- matrix(0, 0L, 0L)) == 0
    kappa(m20 <- matrix(0, 2L, 0L)) == 0
    ## 7) kappa(z=<0-by-0>, norm="1", method="direct", LINPACK=)
    ##                     is an error for LINPACK=FALSE & returns Inf for L..=TRUE)
    kappa(m00, norm = "1", method = "direct", LINPACK= TRUE) == 0
    kappa(m00, norm = "1", method = "direct", LINPACK=FALSE) == 0
    ## Fixed more problems (by MM):
    rcond(  m00 ) == Inf # gave error
    rcond(  m20 ) == Inf # gave error from infinite recursion
    rcond(t(m20)) == Inf #  (ditto)
    ## norm "M" or "F" for exact=TRUE:
    2.25 == kM  # exactly
    all.equal(6.261675485, kF, tol=1e-9)
})
## -- Complex matrices --------------------------------------------------
(zm <- m + 1i*c(1,-(1:2))*(m/4))
(kz1d <- kappa(zm, norm = "1", method = "direct"))
(kz1  <- kappa(zm, norm = "1"))# meth = "qr"
assertWarnV(kz2L  <- kappa(zm, norm="2", LINPACK=TRUE))# now *warns* {gave *error* previously}
assertWarnV(kz2La <- kappa(zm, norm="2", LINPACK=FALSE))# same warning (1-norm instead of 2-)
kz2La
## 4) kappa.qr(z) implicitly assumes nrow(z$qr) >= ncol(z$qr) ..
(kzqr2 <- kappa(qr(cbind(zm, zm + 1)))) # gave Error .. matrix should be square
all.equal(0.058131632, print(rcTm <- rcond(zm, triangular=TRUE          )), tol=0) # 3.178e-9
all.equal(0.047891278, print(rcTL <- rcond(zm, triangular=TRUE, uplo="L")), tol=0) # 4.191e-9
## New: can use norm "M" or "F" for exact=TRUE:
(kz <- kappa(zm, norm="M", exact = TRUE)) # 2.440468
(kF <- kappa(zm, norm="F", exact = TRUE)) # 6.448678
stopifnot(exprs = {
    all.equal(7.8370264, kz1d) # was wrong {wrongly using .kappa_tri()}
    all.equal(6.6194289, kz1)  # {always ok}
    all.equal(0.058131632, rcTm) #  "
    all.equal(0.047891278, rcTL)
    all.equal(6.82135883, kzqr2)
    all.equal(2.44046765, kz, tol = 1e-9) # 1.8844e-10
    all.equal(6.44867822, kF, tol = 4e-9) # 4.4193e-10
})
## norm() and  kappa(., exact=TRUE, ..)  now work ok in many more cases


## argument matching for round/signif (not handled properly in R <= 4.3.x)
round("days", x = Sys.time())
round(, x = 1)
signif(, x = 1)
(function(...) round(..., 1, ))()
(function(...) signif(..., 1, ))()
tools::assertError(round(digits = 1, x =))
tools::assertError(signif(digits = 1, x =))


## transform() should not check.names -- PR#17890
df <- data.frame(`A-1` = 11:12, B = 21:22, check.names = FALSE)
stopifnot(identical(transform(df), df))  # no-op
stopifnot(exprs = {
    identical(names(transform(df, `A-1` = `A-1` + 1)), names(df))
    identical(names(transform(df, C = 3)), c(names(df), "C"))
    identical(transform(as.matrix(df), B = B), df)
})
## in all three cases, "A-1" inadvertently became "A.1" in R < 4.4.0


## byte compiled sqrt() was not warning about creating NaNs for
## negative integer scalars
tools::assertWarning(compiler::cmpfun(function(x) sqrt(x))(-1L))


## is.atomic(NULL) is no longer true
if(is.atomic(NULL)) stop("Should no longer happen: 'NULL' is not atomic")
## untested previously
stopifnot(is.null(sort(NULL)), is.null(sort.int(NULL)))
## failed in first version of `R-is` branch


## isoreg() seg.faulted with Inf - PR#18603 - in R <= 4.3.1
assertErrV(isoreg(Inf))
assertErrV(isoreg(c(0,Inf)))
assertErrV(isoreg(rep(1e307, 20))) # no Inf in 'y'
## ==> Asserted error: non-finite sum(y) == inf is not allowed


## format() and print() of complex numbers, PR#16752
100+ 0:4 + 10000i  # no 'e'
100+ 0:4 + 100000i # using 'e' as it is shorter
z <- 100+ 0:4 + 1e9i
## for a long time printed identical 5 time  0e+00+1e+09i
(asCz <- as.character(z))
oZ <- capture.output(z)
stopifnot(exprs = {
        substr(asCz, 1,6) == paste0(100+ 0:4, "+1e")
    as.complex(asCz) == z # has been fulfilled for a long time
    identical(oZ, paste("[1]", paste(asCz, collapse=" ")))
})
## had exponential/scientific format for Re() as well, from R 3.3.0 to R 4.3.z


## PR#18579 (thanks to Mikael Jagan) -- cbind/rbind deparse.level for *methods*
.S3method("cbind", "zzz",
          function(..., deparse.level = 1)
              if(!missing(deparse.level)) deparse.level)
x <- structure(0, class = "zzz")
stopifnot(exprs = {
    is.null(cbind(x)) # deparse.level  *missing* {always ok}
    identical(0,  cbind(x, deparse.level = 0))
    identical(1,  cbind(x, deparse.level = 1))
    identical(2,  cbind(x, deparse.level = 2))
    identical(2L, cbind(x, deparse.level = 2L))
})
## passing to S3/S4 method did not work in R <= 4.3.x


## Conversion of LaTeX accents: \~{n} etc vs. \~{}, accented I and i
stopifnot(identical(
    print(tools::parseLatex("El\\~{}Ni\\~{n}o") |>
          tools::latexToUtf8() |>
          tools::deparseLatex(dropBraces = TRUE)),
    "El~Ni\u00F1o")) # "El~Niño"
## gave "El~Ni~no" in R 4.3.{0,1} (\~ treated as 0-arg macro)
stopifnot(tools:::cleanupLatex(r"(\`{I}\'{I}\^{I}\"{I})")
          == "\u00cc\u00cd\u00ce\u00cf")
## was wrongly converted as "ËÌÍÏ" in R <= 4.3.1
stopifnot(tools:::cleanupLatex(r"(\`{i}\'{i}\^{i}\"{i})")
          == "\u00ec\u00ed\u00ee\u00ef")
## codes with i instead of \i were unknown thus not converted in R <= 4.3.1


## tools::deparseLatex() can drop successive LaTeX groups
bib1 <- bibentry("misc", key = "test", year = "2023",
                 author = r"(averig{\"u}{\'e})")
bib2 <- bib1; bib2$author$family <- r"(averig\"{u}\'{e})"
roundtrip <- function (tex, drop = FALSE)
    tex == tools::deparseLatex(tools::parseLatex(tex), dropBraces = drop)
stopifnot(exprs = {
    citeNatbib("test", bib1) == "(averig\u00fc\u00e9 2023)"
    citeNatbib("test", bib2) == citeNatbib("test", bib1)
    roundtrip(r"(\{R\})", TRUE) # escaped braces are not dropped
    roundtrip(r"(\href{https://bugs.R-project.org/}{Bugs})", TRUE)
})
## the first produced "(averigü{é} 2023)" in R < 4.4.0
stopifnot(roundtrip(r"(\item text)"))
## space was lost in R < 4.4.0
proc.time() - .pt; .pt <- proc.time()


## PR#18618: match()  incorrect  with POSIXct || POSIXlt || fractional sec
(dCT <- seq(as.POSIXct("2010-10-31", tz = "Europe/Berlin"), by = "hour", length = 5))
(dd <- diff(dCT))
chd <- as.character(dCT)
vdt <- as.vector   (dCT)
dLT <- as.POSIXlt  (dCT)
dat <- as.Date     (dCT)
dL2 <- dLT[c(1:5,5)]; dL2[6]$sec <- 1/4
dL. <- dL2          ; dL.[6]$sec <- 1e-9
stopifnot(exprs = {
    inherits(dCT, "POSIXct")
    inherits(dLT, "POSIXlt")
    !duplicated(dCT)
    dd == 1
    units(dd) == "hours"
    diff(as.integer(dCT)) == 3600L # seconds
    identical(match(chd, chd), c(1:3, 3L, 5L))
    identical(match(vdt, vdt), seq_along(vdt))
    identical(match(dat, dat), c(1L,1L, 3L,3L,3L)) # always ok
    identical(match(dCT, dCT), seq_along(dCT)) # wrong in 4.3.{0,1,2}
    identical(match(dLT, dLT), seq_along(dLT)) #  "    "   "
    identical(match(dL2, dL2), seq_along(dL2)) #  "    "   "
    identical(match(dL., dL.), seq_along(dL.)) #  "    "  now ok, as indeed,
  ! identical(dL.[5], dL.[6]) # NB: `==`, diff(), ... all lose precision, from as.POSIXct():
    inherits(dC. <- as.POSIXct(dL.), "POSIXct")
    identical(match(dC., dC.), c(1:5, 5L))
    identical(dC.[5], dC.[6])
    dC.[5] == dC.[6]
} )
## failed (partly) in R versions  4.3.0 -- 4.3.2


## PR#18598: *wrong* error message
writeLines(eMsg <- tryCmsg(
    diff(1:6, differences = integer(0L))
))
if(englishMsgs) stopifnot(grepl("must be integers >= 1", eMsg))
## errored with "missing value where TRUE/FALSE needed" in R <= 4.3.2


## PR#18563: drop.terms(*, dropx = <0-length vector>)
tt <- terms(y ~ a+b)
stopifnot(identical(tt, drop.terms(tt, dropx = 0[0], keep.response=TRUE)))
## errored in R <= 4.3.2


## as.complex("<num>i") -- should work (and fail/warn) as the parser does:
       assertWarnV(  cc <- as.complex("12iL"))
tools::assertWarning(cF <- as.complex("12irene"))
tools::assertWarning(cI <- as.complex("12I"))
stopifnot(is.na(cc), is.na(cF), is.na(cI),
          identical(cc, cF), identical(cF, cI), identical(cI, NA_complex_))
stopifnot(exprs = {
    identical(1i,        as.complex("1i"))
    identical(4i,        as.complex("+4.i"))
    identical(-0.1i,     as.complex("-.1i"))
    identical(-4.321i,   as.complex("-4.321i"))
    identical(-4.3e-17i, as.complex("-4.3e-17i"))
    identical(+.123e6i,  as.complex("+.123e6i"))
    identical(-4.3e6i,   as.complex("-4.3e6i"))
    identical( 30000i,   as.complex("+.3e+5i"))
})
## returned NA_complex_ *with* a warning, in R <= 4.4.0


## c(NA, <cplx>); cumsum(<cplx_w_NA>) -- related to as.complex(NA_real_); R-devel ML
cx <- function(r,i) complex(real=r, imaginary=i)
pz <- function(z) noquote(paste0("(", Re(z), ",", Im(z), ")"))
pz(z <- c(1i, NA))
NA.1 <- cx(NA, 1)
stopifnot(exprs = {
    Im(z) == 1:0 # was  (TRUE  NA)
    identical(z, cx(c(0,NA), c(1,0))) # new
    identical(sum(z), NA.1)           #  "
    ## these were all TRUE already :
    identical(prod(z), NA_complex_)
    identical(Im(cumsum(z)), cumsum(Im(z)))
    identical(Re(cumsum(z)), cumsum(Re(z)))
    identical( sum(z), tail( cumsum(z), 1L))
    identical(prod(z), tail(cumprod(z), 1L))
})
## gave NA_complex_ in more cases in R <= 4.4.0


## PR#18627 - getS3method() should match method dispatch {and isS3method()}
stopifnot(exprs = {
            ! isS3method("t", "test")
    is.null( getS3method("t", "test", optional=TRUE) )
    identical(dim(t(structure(matrix(, 3, 2), class = "test"))), # t.test() is *not* called:
              2:3)
})
## getS3method(..) did return the t.test function, in R <= 4.3.2


## PR#18564,5,6:  drop.terms(*)
tt <- terms(y ~ a+b)
stopifnot(formula(drop.terms(tt))                     == {   ~ a+b }) # was  y ~ a + b
stopifnot(formula(drop.terms(tt, keep.response=TRUE)) == { y ~ a+b }) # (unchanged)
## did not drop y (with default keep.response=FALSE) in R <= 4.3.2
##
## PR#18565: offset() in formula
tto <- terms(y ~ a + b + offset(h))
(ttF <- drop.terms(tto, 1L, keep.response = FALSE))
(ttT <- drop.terms(tto, 1L, keep.response = TRUE ))
(tt.2 <- tto[2L])
stopifnot(exprs = {
    formula(ttF) ==     ~ b + offset(h)
    formula(ttT) == { y ~ b + offset(h) }
    formula(tt.2)== { y ~ b + offset(h) }
    identical(attr(ttF, "offset"), 2L)
    identical(attr(ttT, "offset"), 3L)
    identical(attr(tt.2,"offset"), 3L)
}) ## all dropped 'offset' in R <= 4.3.2
##
## PR#18566:
remattr <- function(x) { attributes(x) <- NULL; x } ## do we already have this?
t2 <- terms(~ a + b)
str(dt2 <- drop.terms(t2, 1, keep.response = TRUE))
stopifnot( drop.terms(t2, 1) == dt2, remattr(dt2) == quote(~ b))
## gave a+b ~ b in R <= 4.3.2


## cov2cor(<0x0>) PR#18423
m00 <- matrix(0,0,0)
stopifnot(identical(cov2cor(m00), m00))
## gave error in R <= 4.3.2


## cov2cor(.) warning(s) with negative/NA diag(.) - PR#18424
(D_1 <- diag(-1, 3L))
op <- options(warn=1)
m <- capture.output(r <- cov2cor(D_1), type = "message")
matrix(rep_len(c(1, rep(NaN,3)),3*3), 3) -> r0
stopifnot(all.equal(r, r0, tol = 0, check.attributes = FALSE),# always ok
          length(m) == 2, grepl("^ *diag.V. ", m[2]))
options(op) # revert
## cov2cor() gave 2 warnings on 3 lines, the 2nd one inaccurate in R <= 4.3.2


## `formals<-` failing for _explicit_ constant body and empty formals
fbList <- c(Sys.info, body, lm
            ## constant body:
            , function() "foo"
            , function()r"(')"
            , function()   1L
            , function() TRUE
            , function()   1i
            , function() 3.14
            , function()  Inf
            )
for(f in fbList) {
    g <- f ; formals(g) <- formals(g)
    h <- f ;    body(h) <- body(h)
    stopifnot(identical(g, f),
              identical(h, f))
}
## those w/ constant body failed in `formals<-`  in R <= 4.3.x
## with Error in as.function.default(....): list argument expected



## fix error message of as.function(..1, *)
(msg <- tryCmsg(as.function(list({}, 1), .GlobalEnv)))
stopifnot(!englishMsgs || grepl("invalid formal argument list", msg),
          grepl('"as.function"', msg, fixed=TRUE))
## had "function" wrongly in R <= 4.3.x


## removeSource() checking *formals* incl in sub-functions -- PR#18638
f <- function(x = {}) {
    function(y = {}) { NULL }
}
str(lapply(formals(f), attributes)) # list(x = list(srcref = .., srcfile = .. wholeSrcref = ..))
f0 <- removeSource(f) # was unchanged in R <= 4.3.2
## in sub function {not atttrib}:
(toplev <- !sys.nframe())
op <- options(keep.source = TRUE)
qf <- quote(function() NULL)
str(qf4 <- qf[[4]]) # srcref, now removed:
qf0 <- removeSource(qf)
stopifnot(exprs = {
    ## no "srcref" anymore for the formals of f0 or its result:
    identical(lapply(formals(f0),   attributes), list(x = NULL))
    identical(lapply(formals(f0()), attributes), list(y = NULL))
    ##
    length(qf) == 4L
    length(qf0)== 4L
    is.integer(qf4)
    length(qf4) >= 8
    if(toplev) # e.g., when source()d
        qf4 == c(1L, 13L, 1L, 27L, 13L, 27L, 1L, 1L) # in qf[] but not in qf0[]
    else
        qf4 >= 1L
    is.null(qf0[[4L]])
})
options(op)
## f0 and qf0 were unchanged, keeping srcref in R <= 4.3.*


## startDynamicHelp(): port out of range, PR#18645
op <- options(help.ports = 123456L)
assertErrV(tools::startDynamicHelp())
assertErrV(help.start(browser = identity))
options(op)
## silently failed much later in R <= 4.3.2.


## checks for x == y when operands are call objects, PR18676
## disabled if == for calls would signal an error
if (is.na(Sys.getenv("_R_COMPARE_LANG_OBJECTS", unset = NA_character_))) {
    stopifnot(quote({a}) != quote({b}))
    stopifnot(quote(c(1)) != quote(c(1L)))
    stopifnot(quote(c(1.234567890123456)) != quote(c(1.2345678901234567)))
}

## <POSIXlt>[] -- PR#18681
(x <- as.POSIXlt(.POSIXct(0, tz = "UTC"))) # "1970-01-01 UTC"
x$mon <- 12L
stopifnot(exprs = {
    identical(12L, x[,"mon"]) # had "balanced" attr.!
    identical(x, (x1 <- (x[1L])))
    identical(12L, x1$mon)				# (never bug)
    identical("1971-01-01 UTC", format(x, usetz=TRUE))	#  "
    identical(71L, balancePOSIXlt(x)$year)		#  "
    is.na(attr(x1, "balanced")) # was 'TRUE'
})
## subsetting set "balanced" incorrectly sometimes in R 4.3.*


## str(<classed-language>)
x_u <- structure(quote(a > 2 * b), class = 'new_class')
writeLines(sto <- capture.output(str(x_u)))
stopifnot(grepl("a > 2 * b", sto[[1]], fixed=TRUE), # had ' > a 2 * b'
          grepl('attr\\(\\*,.*"new_class"', sto[[2]]))
## previously used as.character() as "last resort" in R <= 4.3.*


## Rd2ex() with code directly following a \dont...{} tag
rd <- tools::parse_Rd(textConnection(c(
    "\\name{test}\\title{test}\\examples{",
    "\\dontshow{if(TRUE)} stop('catch me')",
    "print(0)}"
)))
tools::Rd2ex(rd, tf <- tempfile())
tools::assertError(source(tf), verbose = TRUE)
## skipped the stop() and printed 0 in R < 4.4.0


## as.data.frame(<empty matrix) ; Davis Vaughan R-devel, 2024-03-21
for(nr in 0:2) {
    dput(d0 <- as.data.frame(matrix(nrow = nr, ncol = 0)))
    stopifnot("names" %in% names(attributes(d0)),
              identical(character(), names(d0)))
}
## had no .$names at all in R < 4.4.0


## C level R_nonInt() less tolerant, used more often
(gd <- getVaW(dbinom(1234560:1234570, 9876543.2, .5)))
gp  <- getVaW(pbinom(1234560:1234570, 9876543.2, 1/8))
(gdp <- getVaW(dpois(9876543 + (2:8)/10, 1e7)))
stopifnot(exprs = {
    !englishMsgs ||
        identical(gd, structure(rep(NaN, 11), warning = "NaNs produced"))
    identical(gd, gp)
    identical(gdp, structure(rep(0,7), # only *last* warning:
                             warning = "non-integer x = 9876543.800000"))
})
## did not warn; just treat 98... as an integer in R < 4.4.0


## Finally deprecate terms.formula()'s  'abb' and 'neg.out' args:
tt <- terms(y ~ a+b)
t0 <- getVaW(terms(y ~ a+b, abb = 1))
t1 <- getVaW(terms(y ~ a+b, neg.out = 0))
t2 <- getVaW(terms(y ~ a+b, abb=NA, neg.out=NA))
stopifnot(exprs = {
    !englishMsgs ||
    identical(t0, structure(tt, warning = "setting 'abb' in terms.formula() is deprecated"))
    !englishMsgs ||
    identical(t1, structure(tt, warning = "setting 'neg.out' in terms.formula() is deprecated"))
    identical(t2, t1)
})
## deprecation was only on help page  for R 4.3.*


## error jump happened after mutation through R 4.3.3
x <- expression(a)
tryCatch(x[[2]] <- list(), error = invisible)
stopifnot(identical(x, expression(a)))


## table |> as.data.frame() |> xtabs() round-trip with missing counts
tab <- replace(UCBAdmissions[,,1], 1, NA)
stopifnot(identical(c(xtabs(Freq ~ ., as.data.frame(tab))), c(tab)))
## NA turned into 0 in R < 4.4.0


## PR#16358 overflowing exponents.
x <- 1e999999999999
stopifnot(identical(x, Inf))


## PR#17199: these were zero on systems where long double == double.
x <- as.numeric(c("0x1.00000000d0000p-987",
                  "0x1.0000000000000p-1022",
                  "0x1.f89fc1a6f6613p-974"))
x
y <- c(7.645296e-298, 2.225074e-308, 1.23456e-293)
stopifnot(all.equal(x, y))


## require a non-empty exponent digit sequence in R_strtod.
## R 4.4.0 (and many accounts) accepted empty one.
{
    ## someone set options(warn = 2) above
    op <- options(warn = 1L)
    stopifnot(is.na(as.numeric("1234E" )), is.na(as.numeric("0x1234p")),
              is.na(as.numeric("1234E+")), is.na(as.numeric("0x1234p-")))
    stopifnot(as.numeric("1234E0") == 1234, as.numeric("0x1234p0") == 4660)
    options(op)
}


## as.<atomic>(<list of raw(1)>) , PR#18696
i  <- 1:11           ; il <- as.list(i)
ch <- as.character(i); cl <- as.list(ch)
r  <- as.raw      (i); rl <- as.list(r)
stopifnot(exprs = {
    is.list(cl) ; is.list(il) ; is.list(rl)
    ## as.<atomType>(<list of <atomType>(1)):
    identical(ch, as.character(cl))
    identical(i,  as.integer  (il))
    identical(r,  as.raw      (rl))
    ## as.integer() works for the "character list" `cl` :
    identical(as.integer(cl), i)
    identical(as.integer(cl),
              as.integer(ch))
    ## as.double() works for "integer list"  `il`
    identical(as.double(il),
              as.double(i))
    ## new as.integer() for raw:
    identical(i, as.integer(rl))
})
## as.raw(rl) and as.integer(rl) failed in R <= 4.4.x


## as.data.frame.matrix(<NA in rownames>, make.names = NA)
(m12 <- matrix(1:6, 2,3, dimnames=list(rn <- c('r1', 'r2'),
                                       cn <- c(NA, "NA", 'c3'))))
m2 <- m12; rownames(m2)[1] <- NA; m2
m  <- m2 ; rownames(m )[2] <- "NA"; m
d   <- as.data.frame(m)
d2  <- as.data.frame(m2)
d12 <- as.data.frame(m12)
d0 <- d; row.names(d0) <- NULL; d0
##   NA NA c3
## 1  1  3  5
## 2  2  4  6
stopifnot(exprs = {
    identical(2:3, dim(m))
    identical(2:3, dim(m2))
    identical(cn, colnames(m))
    identical(cn, colnames(m2))
    identical(cn, colnames(m12))
    ## data frames too
    identical(2:3, dim(d))
    identical(2:3, dim(d2))
    identical(cn, colnames(d))
    identical(cn, colnames(d2))
    identical(cn, colnames(d12))
})
## (*not* wrongly):
rownames(d)  # [1] "NA..1" "NA."
rownames(d2) # [1] "NA."  "r2"
rownames(d12)# [1] "r1"   "r2"
## want the rownames to be treated differently ---> bug for make.names=NA
as.data.frame(m,  make.names=FALSE) |> assertErrV()
as.data.frame(m2, make.names=FALSE) |> assertErrV()
as.data.frame(m2, make.names=TRUE)  # (the  PR#18702 -- print.data.frame  "bug")
(m0 <- m[FALSE, ])
i0 <- integer(0); (d00 <- `names<-`(data.frame(i0, i0, i0), cn))
stopifnot(exprs = {
    identical(d00, as.data.frame(m0, make.names=TRUE))
    identical(d00, as.data.frame(m0, make.names=NA))
    identical(d00, as.data.frame(m0, make.names=FALSE))
    identical(d12, as.data.frame(m12, make.names=TRUE))  ## as above; rownames "r1" "r2"
    identical(d12, as.data.frame(m12, make.names=NA))
    identical(d12, as.data.frame(m12, make.names=FALSE))
    identical(d0,  as.data.frame(m,   make.names=NA)) # internal default row names
    identical(-2L, .row_names_info(d0))
})
## the last lost row.names => dim(.) was 0 x 3  instead of  d0's  2 x 3, in R <= 4.4.0


## Scan should not treat "NA" as double/complex when na.strings doesn't
## include it (PR#17289)
(r <- tryCid(scan(text="NA", what=double(), na.strings=character())))
stopifnot(inherits(r, "error"))
(r <- tryCid(scan(text="NA", what=complex(), na.strings=character())))
stopifnot(inherits(r, "error"))


## PR#18143: debugcall(<S3Generic>()) when an S4-generic version is cached
stopifnot(exprs = {
    isGeneric("summary", getNamespace("stats4"))
    isNamespaceLoaded("stats4")
    isS3stdGeneric(summary) # cached S4 generic is not visible
})
debugcall(summary(factor(1)))
## failed in R <= 4.4.0 with Error in fdef@signature :
##   no applicable method for `@` applied to an object of class "function"
stopifnot(isdebugged(summary.factor))
undebug(summary.factor)
stopifnot(!isdebugged(summary.factor))
unloadNamespace("stats4")


## PR#18674 - toTitleCase() incorrectly capitalizes conjunctions
## (e.g. 'and') when using suspensive hyphenation
stopifnot(exprs = {
    identical(tools::toTitleCase("pre and post estimation"),  "Pre and Post Estimation")
    identical(tools::toTitleCase("pre- and post estimation"), "Pre- and Post Estimation")
    identical(tools::toTitleCase("pre- and post-estimation"), "Pre- and Post-Estimation")
})

## PR#18724 - toTitleCase(character(0))
ch0 <- character(0L)
stopifnot(identical(ch0, tools::toTitleCase(ch0)))
## was list() in R <= 4.4.0


## PR#18745 (+ PR#18702)   format.data.frame() -> as.data.frame.list()
x <- setNames(data.frame(TRUE), NA_character_)
(fx <- format(x))
dN <- data.frame(a  = c(1,NA),     b  = c("a",NA),
                 c3 = c("NA", NA), c4 = c(NA, FALSE))
names(dN) <- nms <- c("num", "ch", NA, NA)
(fdN <- format(dN))
L <- list(A = FALSE); names(L) <- NA
names(dL  <- as.data.frame.list(L))                                          # "NA."
names(dL1 <- as.data.frame.list(L, col.names = names(L)))                    # "NA."
names(dL2 <- as.data.frame.list(L, col.names = names(L), check.names=FALSE)) #  NA  (was "NA")
names(dL1.<- as.data.frame.list(L,                       check.names=FALSE)) # "NA"
names(dLn <- as.data.frame.list(L, new.names = TRUE,     check.names=FALSE)) #  NA  (was "NA")
prblN <- c("", "var 2"); L2 <- `names<-`(list(1, 23), prblN)
##                        check.names = TRUE, fix.empty.names = TRUE  are default :
dp11 <- as.data.frame(L2)
dp01 <- as.data.frame(L2, check.names=FALSE)
dp00 <- as.data.frame(L2, check.names=FALSE, fix.empty.names=FALSE)
dp10 <- as.data.frame(L2, check.names=TRUE , fix.empty.names=FALSE)
L3 <- c(L, list(row.names = 2))
names(dL3  <- as.data.frame.list(L3))                    # "NA." "row.names"
names(dL3n <- as.data.frame.list(L3, check.names=FALSE)) #  NA   "row.names", was "NA" "rown..."
names(dL3nn<- as.data.frame.list(L3, check.names=FALSE, new.names=FALSE)) # #     "NA" "rown..."
stopifnot(exprs = {
    is.na(names(x))
    is.data.frame(fx)
    identical(NA_character_, names(x))
    identical(NA_character_, names(fx)) # was "NA"  wrongly
    identical(NA_character_, names(dLn))#  "   "
    identical(NA_character_, names(dL2))#  "   "
    identical(nms, names( dN))
    identical(nms, names(fdN)) # was    .. .. "NA" "NA"
    identical(dLn, dL2) # was always TRUE;  ditto these {wrong for a couple of hours}:
    names(dp11) == c("X1", "var.2")
    names(dp01) == c( "1", "var 2")
    names(dp00) == c( "" , "var 2") # == prblN
    names(dp10) == c( "" , "var.2")
    identical(names(L3), names(dL3n)) # now.  The next 3 are not new:
    identical("NA.", names(dL))
    identical("NA.", names(dL3)  [[1]])
    identical("NA" , names(dL3nn)[[1]])
})
## format() and as.data.frame(<list>, col.names=*, check.names=FALSE) *did*
## change  NA names() into "NA"  for R <= 4.4.1


## warning for even *potential* underflow
B <- 2e306
stopifnot(beta(B, 4*B) == 0,
          all.equal(-5.00402423538187888e306, lbeta(B, 4*B), tolerance = 5e-16))
## no longer warns - as we require IEEE_745


## as reg-tests-1<ch>.R run with LC_ALL=C  -- test Sys.setLanguage() here
try( 1 + "2")
oL <- tryCatch(warning = identity,
               Sys.setLanguage("fr")
               ) # e.g. on Windows: .. C locale, could not change language"
if(inherits(oL, "warning")) {
    print(oL)
    oL <- structure(conditionMessage(oL), ok = FALSE)
}
(out <- tryCmsg(1 + "2"))
if(attr(oL, "ok") && capabilities("NLS") && !is.na(.popath)
   && !grepl("macOS", osVersion) # macOS fails currently
   ) {
    ## .+ to work with multi-byte characters in C encoding
    stopifnot(is.character(print("checking 'out' : ")),
              grepl("^argument non num.+rique pour un ", out))
    ## was *not* switched to French (when this was run via 'make ..')
    ## reset {just in case}:
    Sys.setLanguage("en")
}


## print( ls.str() ) using '<missing>' also in non-English setup:
##                  {test may give false negative, unproblematically}
M <- alist(.=)$.
stopifnot(missing(M))
try( M ) # --> Error: argument "M" is missing, with no default  (typically English)
(e0 <- tryCatch(M, error=identity)) # <evalError: argument "M" is missing, with no default>
stopifnot(c("evalError", "missingArgError", "error") %in% class(e0))
ls.str(pattern = "^M$") # (typically:)   M : <missing>
(oL <- tryCatch(Sys.setLanguage("de"), warning = identity, error = identity))
try( M ) # in good case --> Error : Argument "M" fehlt (ohne Standardwert)
(out <- capture.output(ls.str(pattern = "^M$")))
rm(M); if(isTRUE(attr(oL,"ok"))) Sys.setLanguage(oL) # reset LANGUAGE etc
stopifnot(endsWith(out, "<missing>"))
## failed in R <= 4.4.1; out was  "M : Argument \"M\" fehlt <...>"


## "missingArgError" w/ subclasses:
getER <- function(expr) tryCatch(force(expr), error=\(.).)
(ee <- getER((function(x)x)()))
class(ee) #  "evalError" "missingArgError"  "error" "condition"
f <- function() identity()
e2 <- attr(try(f()), "condition") # Error in identity() : argument "x" is missing, with no default
f <- compiler::cmpfun(f)
e3 <- getER(f())
f <- function(arg) is.factor(arg)
g <- function(x) f(x)
e4 <- getER(f())
e5 <- getER(g())
f <- compiler::cmpfun(f)
g <- compiler::cmpfun(g)
e4c <- getER(f())
e5c <- getER(g())
eev <- getER((function() eval(quote(expr = )))())
is.evalErr   <- function(E) c("evalError",   "missingArgError", "error") %in% class(E)
is.getvarErr <- function(E) c("getvarError", "missingArgError", "error") %in% class(E)
f <- function(x) exp(x); eM <- getER(f()) # *not* the same as e2
eM2 <- getER((function(x) exp(x))()) # same as eM
stopifnot(exprs = {
    is.evalErr(ee)
    is.evalErr(e4)
    is.evalErr(e5)
    is.evalErr(eev)
    is.evalErr(eM)
    is.evalErr(eM2)
    identical(e2, e3)
    is.getvarErr(e2)
    is.getvarErr(e4c)
    is.getvarErr(e5c)
})
## all these classed errors are new in R >= 4.5.0


## colSums / rowSums(*, dims = <not scalar>) - PR#18811
A <- array(1:120, dim=2:5)
ch1 <- tryCmsg(colSums (A, dims=1:2))
ch2 <- tryCmsg(rowMeans(A, dims=1:2))
stopifnot(identical(ch1, ch2),
          identical(ch1, "invalid 'dims'"))
## error msg was  "'length = 2' in coercion to 'logical(1)'"


## kappa(*, exact=TRUE)  for exactly singular cases - PR#18817
for(x in list(x3 = {n <- 3L; x <- diag(n); x[n,n] <- 0; x},
              z2 = rbind(1:2, 0),
              D0 = diag(0, nrow = 3))) { print(x)
  stopifnot(exprs = {
    identical(Inf,      kappa(x, exact = TRUE))
    identical(Inf,      kappa(x, exact = TRUE, norm = "2"))
    identical(Inf, .kappa_tri(x, exact = TRUE, norm = "2"))
  })
}
## kappa(..)  returned 1 or {0 with a warning} in R <= 4.4.2


## hexadecimal constants with and without exponent.
0x1.234p0
0x1.234p7
0x1.234p-7
0x1.234
## last was a (deliberate) parse error in R <= 4.4.2, but not as documented.


## PR#18822 -- debug("<S4-generic>")
m0 <- selectMethod("Ops", signature = (SIG <- c("array", "array")))
stopifnot(is.function(m0), inherits(m0, "PossibleMethod"))
debug    ("Ops", signature = SIG) # gave Error
(m1 <- selectMethod("Ops", SIG))
untrace("Ops", signature=SIG) ; m2 <- selectMethod("Ops", SIG)
debugonce("Ops", signature = SIG) # Error ..
m3 <- selectMethod("Ops", SIG)
untrace("Ops", signature=SIG) ; m4 <- selectMethod("Ops", SIG)
stopifnot(exprs = {
    is(m0, "MethodDefinition")
    identical(m0, m2)
    identical(m0, m4)
    is(m1, "MethodDefinitionWithTrace")
    is(m3, "MethodDefinitionWithTrace") # but not the same
})
## both debug(..) and debugonce(..) failed


## debugonce(<simple>) error when called twice --  PR#18824
setGeneric("zzz", function(x) standardGeneric("zzz"))
setMethod("zzz", c(x = "NULL"), function(x) NULL)
m0 <- selectMethod(zzz, signature = "NULL")
debugonce(zzz, signature = "NULL")
m1 <- selectMethod(zzz, signature = "NULL")
debugonce(zzz, signature = "NULL") # gave error "cannot use 'at' argument unless ..."
m2 <- selectMethod(zzz, signature = "NULL")
untrace(zzz, signature = "NULL")
m3 <- selectMethod(zzz, signature = "NULL")
stopifnot(exprs = {
    is(m0, "MethodDefinition")
    is(m1, "MethodDefinitionWithTrace")
    identical(m0, m3)
    identical(m1, m2)
})
## 2nd debugonce() call failed in R <= 4.4.2


## options(scipen = <invalid>)
scipenO <- getOption("scipen")
assertErrV(options(scipen = NULL))# would work (but ..) in R <= 4.4.2
assertErrV(options(scipen = 1:2)) # would just work
assertErrV(options(scipen = 1e99))# would "work" w/ 2 warnings and invalid setting
stopifnot(identical(getOption("scipen"), scipenO))# unchanged
assertWarnV(options(scipen = -100))# warns and sets to min = -9
stopifnot(identical(getOption("scipen"), -9L))
assertWarnV(options(scipen = 100000))# warns and sets to max = 9999
stopifnot(identical(getOption("scipen"), 9999L))
options(scipen=scipenO) # revert
## setting to NULL  would invalidate as.character(Sys.time())


## PR#18369 (patch by Mikael Jagan)
stopifnot(!isGeneric(fdef = print), !isGeneric(fdef = c), isGeneric(fdef = show))
## gave Error  argument "f" is missing ... in R <= 4.4.2


## [cr]bind invoilving raw vectors -- follow up to r57065
x <- as.raw(1:6)
stopifnot(
    identical(cbind(x, c(TRUE,FALSE)), cbind(x=rep(TRUE,6), c(TRUE,FALSE))),
    identical(cbind(x, 1:6), cbind(x=1:6, 1:6)),
    identical(cbind(x, pi), cbind(x=1:6, pi)),
    identical(cbind(x, pi+1i), cbind(x=1:6, pi+1i)),

    # first three were wrong before R 4.4.3
    identical(rbind(x, c(TRUE,FALSE)), rbind(x=rep(TRUE,6), c(TRUE,FALSE))),
    identical(rbind(x, 1:6), rbind(x=1:6, 1:6)),
    identical(rbind(x, pi), rbind(x=1:6, pi)),
    identical(rbind(x, pi+1i), rbind(x=1:6, pi+1i))
)


## [cr]bind had segfaults when R was built for LTO and C99 inlining semantics
## The semantics (inherited from S) are that zero-length inputs
## (including NULL) are ignored unless all inputs are zero-length.
## next four segafaulted
cbind(NULL, logical(0))
cbind(NULL, integer(0))
rbind(NULL, integer(0))
rbind(NULL, logical(0))
## and these could have
cbind(NULL, double(0))
cbind(NULL, complex(0))
rbind(NULL, double(0))
rbind(NULL, complex(0))
## and check some other edge cases
(X <- matrix(integer(0),2,0))
stopifnot(
    is.null(cbind(NULL)),
    is.null(rbind(NULL)),
    is.null(cbind(NULL, NULL)),
    is.null(rbind(NULL, NULL)),
    dim(cbind(NULL, pi)) == c(1L, 1L),
    dim(rbind(NULL, pi)) == c(1L, 1L),
    # zero-length inputs are ignored except for zero-length result
    identical(cbind(X, X), X),
    identical(cbind(X, 1:2), matrix(1:2))
)


## isGeneric(., getName = TRUE, ..) w/ or w/o fdef -- PR#18829
setClass("zzz")
setMethod("+", c(e1 = "zzz", e2 = "missing"), function(e1, e2) e1)
(gen <- isGeneric("+", fdef = `+`, getName = TRUE)) # wrongly returned just TRUE
stopifnot(identical(gen, isGeneric("+", getName = TRUE)), # the latter always worked
          identical(gen, structure("+", package = "base")),
          isGeneric("+"), isGeneric("+", fdef = `+`))

## These gave array-access errors and perhaps segfaults in R <= 4.4.2
ix <- integer(0)
sort.int(ix, method = "quick")
sort.int(ix, method = "quick", index.return = TRUE)
x <- double(0)
sort.int(x, method = "quick")
sort.int(x, method = "quick", index.return = TRUE)


## More warning for  _illegal_ OutDec -- even auto print() ing now warns when OutDec is illegal:
assertWarnV(op <- options(OutDec = "_._", scipen = 6, warn = 1))
assertWarnV( print(pi) ) # _new_ warning ... "will become an error"
writeLines(m <- capture.output(format(pi), type = "message"))
## Warning in prettyNum(.Internal(format(x, trim, digits, nsmall, width, 3L,  :
##   the decimal mark is more than one character wide; this will become an error
assertWarnV(options(OutDec = ""))
m2 <- tryCatch(print(pi), warning = conditionMessage)
assertWarnV( print(pi * 10^(-4:4)) ) # _new_ warning
if(englishMsgs) stopifnot(exprs = {
    grepl("^Warning in prettyNum\\(\\.Internal\\(format\\(", m[1])
    grepl("the decimal mark is more than one character wide", m[length(m)])
    grepl("the decimal mark is less than one character wide", m2)
})
## now warn from format() and (only once) from print()
options(op) # return to sanity + warn=2


## sessionInfo() *prints*  La_version() when not empty
op <- options(warn = 1) # possible warning from Sys.timezone() --> timezone.R
si <- sessionInfo()
str( osi <- capture.output(si)); si$LAPACK <- ""
osi.noLA <- capture.output(si)
if(any(gBL <- grepl("^BLAS/LAPACK:", osi))) {
    ##  *.noLA will have _2_ lines instead, as LAPACK != BLAS now
    print(osi[[iLA <- which(gBL)]])
    v.iLA <- sub(".*; ", " ", osi[iLA])
    v.noLA <- osi.noLA[iLA+1L]
} else {
    stopifnot(length(osi) == length(osi.noLA))
    iLA <- which(osi != osi.noLA)
    print(cbind(osi, osi.noLA)[iLA,]) # was empty ..
    v.iLA <- osi[iLA]
    v.noLA <- osi.noLA[iLA]
}
if(length(iLA) && nzchar(La_version())) { cat("sessionInfo - La_* checking: ")
    stopifnot(nzchar(v.noLA),
              grepl(paste0(v.noLA,"$"),  v.iLA))
    cat("ok\n")
}
## the "LAPACK: .." was entirely empty when  si$LAPACK was ""
options(op)


## arima(*, seasonal = <numeric>)
(m <- tryCmsg( arima(presidents, order=c(2,0,1), seasonal=c(1, 0)) ))
mlnx <- arima(lynx, order = c(0,1,0))
stopifnot(exprs = {
    all.equal(1922.636, mlnx$aic, tolerance = 1e-6) # failed for days
    grepl("'seasonal'", m, fixed=TRUE)
    !englishMsgs ||
    grepl("must be a non-negative numeric vector", m, fixed=TRUE)
})
## gave solve.default() error (as wrong model failed fitting)


##  binomial()$ linkinv(<int>)  and  binomial()$ mu.eta(<int>)
lnks <- c("logit", "probit", "cloglog", "cauchit", "log")
binIlink <- function(eta) sapply(lnks, function(lnk) binomial(lnk)$linkinv(eta))
binImuEt <- function(eta) sapply(lnks, function(lnk) binomial(lnk)$mu.eta (eta))
stopifnot(identical(binIlink(          0:3),
                    binIlink(as.double(0:3))))
stopifnot(identical(binImuEt(          0:3),
                    binImuEt(as.double(0:3))))
## integer type was not allowed for logit (only) in R <= 4.4.2


## {any}duplicated(), unique() for expressions
expr9 <- expression(1,0+1, x+1, x+2, x+1, (x)+1, 1, (1), (x+1))
l9 <- as.list(expr9)
ch9 <- vapply(l9, deparse, "")
stopifnot(exprs = {
    identical(anyDuplicated(l9), 5L)
    identical(anyDuplicated(l9), anyDuplicated(expr9))
    identical(duplicated(expr9), duplicated(ch9))
    identical(unique(expr9), expr9[-c(5,7)])
})
## did not work for expressions in R < 4.5.0


## print(summary.default()) should lose less accuracy; print(.) <=> format(.) :
## Ex. from ISwR (PD), sort(hellung$conc) - "compacted"
helconc <- as.integer(.5 + 1000 *
   c(11, 11, 11.6, 13, 13.5, 14, 14.5, 16, 20, 21, 22, 24, 27, 28+(0:3)*2,
     35, 38, 41,   46, 52, 55,  62, 66, 69,  70, 78, 90,  111, 129, 130, 137, 165,
    175,195,199, 201, 285,302, 321,332,385, 416,461,475,  501, 563, 592, 630, 631))
shN <- 100 * c(110, 275, 690, 1643.25, 2430, 6310)
dput(shel <- summary(helconc))
stopifnot(identical("164325", format(shel)[["Mean"]]),
          identical(shN, scan(quiet=TRUE, text = capture.output(shel)[[2]])))
## for all but *one*  `zdigits = <d>` the double-rounding works fine:
names(shN) <- names(shel)
shfmt <- sapply(setNames(, 3:6), simplify = "array", function(dig)
    sapply(setNames(, -3:9), function(zd) format(shel, digits = dig, zdigits = zd)))
str(ushfmt <- lapply(apply(aperm(shfmt, 3:1), 3L, unique), \(.) unique(as.numeric(.))))
shN2 <- as.list(shN); shN2[["Mean"]] <- shN[["Mean"]] + 0:1
stopifnot(identical(shN2, ushfmt))
## Mean was wrongly double-rounded to "164326" for years in R < 4.5.0


## summary.data.frame(*, digits=NULL)
(sdf <- summary(data.frame(x = seq_along(helconc), helconc), digits = NULL))
stopifnot(is.table(sdf), is.matrix(sdf), identical(dim(sdf), c(6L, 2L)))
## failed for a few days only


## summary(<difftime>) and its print()ing
xt <- .POSIXct(1737745992 + 2/7 + 10000 * (0:7))
(dt <- diff(xt)) # |--> diff.POSIXt()  -- perfect
(sdt <- summary(dt))
stopifnot(exprs = {
    inherits(dt,  "difftime")
    inherits(sdt, "difftime")
    inherits(diff(sdt), "difftime")
             diff(sdt) == 0
    inherits(sdt, "summaryDefault")
    identical(capture.output(sdt), c(
       "Time differences in hours",
       "   Min. 1st Qu.  Median    Mean 3rd Qu.    Max. ",
       strrep('  2.778 ', 6)))
})
## summary(<difftime>) was not useful in R < 4.5.0


## unique(<difftime>)
(unidt <- unique(dt))
stopifnot(inherits(unidt, "difftime"), length(unidt) <= 2) # '2': allow "inaccuracy"
## unique() lost the class  in R < 4.5.0


## optimize(f(x), *) message when f(x) is not finite
ff <- function(x) ifelse(x < -10, (x+10)*exp(x^2),
                     ifelse(x > 100, NaN,
                        ifelse(x > 30, exp((x-20)^2),
                               (4 - x)^2)))
cf <- as.data.frame(curve(ff, -20, 120, ylim = c(-2,200)))
str(ok <- optimize(ff, c(-10, 10)))
stopifnot(all.equal(list(minimum = 4, objective = 0), ok))
op <- options(warn=0)
str(of2 <- optimize(ff, c(-140, 250))); summary(warnings()); uw2 <- unique(warnings())
## NA/NaN  and -Inf  (no +Inf)
str(of3 <- optimize(ff, c(-20, 120)));  summary(warnings()); uw3 <- unique(warnings())
## only 1 Inf
str(of4 <- optimize(ff, c(-10, 180)));  summary(warnings()); uw4 <- unique(warnings())
## +Inf and many NA/NaN
c(uw2, uw3, uw4)
stopifnot(all.equal(of3, ok),
          identical(c(2:1,2L), lengths(list(uw2, uw3, uw4))))
if(englishMsgs)
    stopifnot(identical(c("-Inf replaced by maximally negative value",
                           "Inf replaced by maximum positive value",
                        "NA/NaN replaced by maximum positive value"),
                        sort(unique(c(names(uw2), names(uw3), names(uw4))))))
options(op)# reverting
## in R < 4.4.z  only *one* message .. "NA/Inf replaced by ...."


## as.environment(x = .)  should work
ee <- as.environment(x = list(a = 1, bb = 2))
stopifnot(is.environment(ee), length(ee) == 2L)
## instead, for R <= 4.4.z,  no name or as.environment(object = .) was needed


## tools::parseLatex issues -- PR#18855
assertErrV(tools::parseLatex("{"))
tools::parseLatex("\\begin{foo}\\end{foo}")
tools::parseLatex("\\Sexpr{ 1 + {1} }")
assertErrV(tools::parseLatex("\\begin{foo} abc \\end{bar}"))
tools::parseLatex("\\newcommand{\\test}{\\begin{foo}}")


## quantile.default() needing fuzz PR#15811
x <- 1:1390
stopifnot(identical(print(quantile(x, 0.7, type=2)),
                    c(`70%` = 973.5)))
## was 973  in R <= 4.4.x


## drop.terms(<"one" term>, 1) should work, PR#18861
stopifnot(exprs = {
    identical( ~  1, reformulate(character()))
    identical( ~ -1, reformulate(character(), intercept = FALSE))
    identical(terms( ~ 1 ), drop.terms(terms(y ~ 1 + w), 1))
    identical(terms( ~ 1 ), drop.terms(terms(y ~     w), 1))
    identical(terms( ~ -1), drop.terms(terms(y ~ w - 1), 1))
    identical(terms( ~ -1), drop.terms(terms(y ~ w + 0), 1))
    identical(terms(y ~ 1), drop.terms(terms(y ~ w), 1, keep.response = TRUE))
})
## all these used to error in reformulate()  in R < 4.5.0


## duplicated(<numeric_version>), especially for empty input
options(warn = 2) # should already be set from the top
x <- numeric_version("1")
stopifnot(exprs = {
    identical(duplicated(x[NULL]), logical(0L)) # should not warn
    identical(duplicated(x), FALSE)
    identical(duplicated(c(x,x)), c(FALSE, TRUE))
})
## only in R-devel with PR#18699, the first produced a warning
## In max(lens) : no non-missing arguments to max; returning -Inf


## better error messages when not finding variables in  model.frame() -- PR#18860
dd  <- mtcars ; m <- model.matrix(mpg ~ wt, data = dd) # fine
dd2 <- dd[-match("mpg", names(dd))]
if(exists("mpg")) rm(mpg)
getErrMsg <- function(expr) conditionMessage(assertErrV( expr )[[1L]])
eee <- c(
    getErrMsg(m <- model.matrix(mpg ~ wt, data = dd2))
    ,
    getErrMsg(local({
        mpg <- USJudgeRatings
        model.matrix(mpg ~ wt, data = dd2) # still useful
    }))
    ,
    getErrMsg(local({
        model.matrix(count ~ wt, data = dd)
    })) ## OK (i.e. useful error message, "object 'count' not found")
    ,
    getErrMsg(local({
        count <- function(x, ..., wt = NULL) { UseMethod("count") }
        model.matrix(count ~ wt, data = dd)
    }))
)
if(englishMsgs)
    stopifnot(identical(
        eee,
        c("object 'mpg' not found",
          "invalid type (list) for variable 'mpg'",
          "object 'count' not found",
          "invalid type (closure) for variable 'count'")))
## the last one differed


## Setting attributes on primitive functions .. [Henrik Bengtsson, R-devel]
stopifnot(is.primitive(sum))
msum <- sum
assertErrV(void <- structure(sum, foo = TRUE))
assertErrV(attributes(msum) <- list(foo = NA))
## a few days later:  Disable working via  attr(*, "<name>") <- value  as well:
assertErrV( attr(msum, "foo") <- NA )
stopifnot(identical(sum, msum), is.null(attributes(msum)))
## all 3 examples, the first a special case of the 2nd, did not error, but *modified* the base::sum primitive


## terms.formula(*, specials="<non-syntactic>") -- PR#18568
f1 <- y ~ x1 + `|`(x2, f)
t1 <- terms(f1, specials = "|")
(cs <- colSums(attr(t1, "factors")[attr(t1, "specials")[["|"]], , drop=FALSE]))
(drp <- which(as.logical(cs))) # 2
(dt1 <- drop.terms(t1, drp, keep.response = TRUE))
stopifnot(identical(attr(t1, "specials"), pairlist(`|` = 3L)),
          inherits(dt1, "terms"), dt1 == (y ~ x1))
f3 <- y ~ x1 + (x2 | f) + (x3 | g)
t3 <- terms(f3, specials = "|")
str(t3)
dropx <- which(as.logical(colSums(attr(t3, "factors")[attr(t3, "specials")[["|"]], ])))
dt3 <- drop.terms(t3, dropx, keep.response = as.logical(attr(t3, "response")))
stopifnot(identical(attr(t3, "specials"),
                    pairlist(`|` = 3:4)),
          dt3 == (y ~ x1))
## was unchanged  y ~ x1 + (x2 | f) + (x3 | g)


## setting environment(<primitive>) -- was mutilating the base object (in R <= 4.4.x)
s <- sum   ; assertWarnV(environment(s) <- baseenv())
environment(s) <- NULL # no warning (and no effect)
r <- return; assertWarnV(environment(r) <- baseenv())
## then an error for about one day; now is deprecated (and no longer mutating).


## signif(<LRG>, dig) -- PR#18889
stopifnot(all.equal(1.1e308,  signif(1.06e308,   2)),
          all.equal(1.01e308, signif(1.0055e308, 3)))


## prettyNum(.., zero.print = <2-or-more-char>, replace.zero=TRUE) --
zp <- "--"; num <- -1:2
assertWarnV(
p1 <- prettyNum(num, zero.print = zp) )
p2 <- prettyNum(num, zero.print = zp, replace.zero=TRUE) # was Error (converted from warning)
stopifnot(identical(p1[2], substr(zp,1,1)),
          identical(p2[2], zp),
          identical(p1[num != 0], p2[num != 0]),
          identical(p2, local({ p <- as.character(num); p[p == 0] <- zp; p })))
## p2 gave warning too, and was the same as p1, erronously in  R <= 4.5.0


## `[.table` consistency, PR#18845
T <- table(c(0:3,3:1,1:0), c(0:4,3:0)) ; class(T) <- c("myT", class(T))
T1 <- T[,3 , drop=FALSE]; dim(T1) <- length(T1); str(T1) # 1d table
stopifnot(exprs = {
    identical(T, T[TRUE,]) # [..]  had lost "myT" class
    identical(T, T[,TRUE])
    identical(T1, T1[TRUE]) # (worked before)
    identical(class(T1), class(T)) # failed
    identical(T1, T1[TRUE])
})
## subsetting only kept "table" class in R <= 4.5.x


## t.test(<Inf>...) -- PR#18901
x <- c(1:6,Inf); y <- c(1:20, Inf); yN <- c(-Inf, 1:20)
(tt1 <- t.test(x))
tt2. <- t.test(x, y)
(tt2N <- t.test(x, yN))
stopifnot(exprs = {
    inherits(tt1,  "htest"); is.na(c(tt1 $p.value, tt1 $conf.int))
    inherits(tt2., "htest"); is.na(c(tt2.$p.value, tt2.$conf.int))
    inherits(tt2N, "htest"); is.na(c(tt2N$p.value, tt2N$conf.int))
    tt1$estimate == Inf
    tt2N$estimate == c(Inf, -Inf)
})
## The t.test() calls errored all in R <= 4.5.1
proc.time() - .pt; .pt <- proc.time()


## long standing "FIXME" fixed:
stopifnot(is.ts(ts(1:711, frequency=2*pi, start = 1, end = 114)))
assertErrV(     ts(1:711, frequency=2*pi, start = 1, end = 114, ts.eps = 1e-6) )
## did *not* error in R <= 4.5.1, as 'ts.eps' was *not* passed to C code


## match(<Date>, <character>) and vice versa
op <- options(warn = 1)# PR#18931 - does warn for 32-bit time_t
date_seq <- seq(as.Date("1705-01-01"), as.Date("2024-12-31"), by="days")
options(op)
dt1 <- as.Date("2024-05-01")
dt3 <- c(dt1, as.Date(c("1800-01-01", "2025-02-02")))
system.time({
 tmp <- dt1 %in% date_seq
 tm3 <- dt3 %in% date_seq
})# 0.260 in R 4.3.0 ff
##  0.003 or so after fixing
stopifnot(tmp, identical(tm3, c(TRUE, TRUE, FALSE)))
## The 1-1 case (fast branch in C's match5()):
ch <- "2025-05-05" ; D <- as.Date(ch)
c2 <- "1925-05-05"
c(cDT = ch %in% D, DcT = D %in% ch,
  cDF = c2 %in% D, DcF = D %in% c2)
stopifnot(ch %in% D, D %in% ch, !(c2 %in% D), !(D %in% c2))
## had failed in R-devel around 2025-06-26 (and before R 4.3.0)


## length(<expression>) <- value
x <- expression(.)
length(x) <- 0L
stopifnot(identical(x, expression()),
          identical(`length<-`(x, 2L), expression(NULL, NULL)))


## (fix|assign)InNamespace(<S3method>) when the generic is not in search()
try(detach("package:tools"), silent = TRUE) # just in case
assertValueIs <- function (value) stopifnot(exprs = {
    identical(tools:::toRd.default(1), value)
    identical(tools::toRd(1), value)
})
assertValueIs("1")
## modify the default method to return an empty string:
omethod <- tools:::toRd.default
assignInNamespace("toRd.default", `body<-`(omethod, value = ""), "tools")
## R <= 4.5.1 gave Error: object 'toRd' of mode 'function' was not found
assertValueIs("")  # failed for tools::toRd(1): S3 table was not updated
## now restore the original definition, testing fixInNamespace():
fixInNamespace("toRd.default", "tools", editor = function (...) omethod)
## failed in R <= 4.5.1
assertValueIs("1")


## No warnings for hist(.., log="x") -- PR#18921
hist(1:100, breaks = 2^(0:8), log = "x")
## used to signal 3 warnings


## subassigning from real to complex keeping zero imaginary part
ll <- as.list(c(NA, 0L, NA_integer_, 0, NA_real_, NaN, -Inf, Inf,
                complex(real = 2:-1, imaginary = c(-Inf, 0:1, Inf)), NA_complex_))
rr <- vapply(ll, Re, 0)
ii <- vapply(ll, Im, 0) # all 0, but the very last
chk <- function (x, y = as.vector(x)) stopifnot(identical(Re(y), rr),
                                                identical(Im(y), ii))
chk(unlist(ll))
a1 <- a2 <- complex(m <- length(ll))
for (i in seq_len(m)) a1[i] <- a2[[i]] <- ll[[i]]
chk(a1); chk(a2)
a1 <- a2 <- array(0i, c(m))
for (i in seq_len(m)) a1[i] <- a2[[i]] <- ll[[i]]
chk(a1); chk(a2)
a1 <- a2 <- array(0i, c(m, 1L))
for (i in seq_len(m)) a1[i, 1L] <- a2[[i, 1L]] <- ll[[i]]
chk(a1); chk(a2)
a1 <- a2 <- array(0i, c(m, 1L, 1L))
for (i in seq_len(m)) a1[i, 1L, 1L] <- a2[[i, 1L, 1L]] <- ll[[i]]
chk(a1); chk(a2)
## Im(.)s had more NA's than just at the end, in R <= 4.5.z


## format(<list of objects>) -- now dispatches correctly
dts <- seq(.Date(11100), .Date(11111))
(fD <- format(Ldt <- as.list(dts)))
stopifnot(is.list(Ldt), vapply(Ldt, inherits, NA, "Date"),
          identical(fD, format.Date(dts)))
# fD  was "11100" "11101" .... "11111" in R <= 4.5.z


## hist(*, plot=FALSE) warning about "nonsensical" arguments
hiW <- getVaW(hist(1:22, log = "x", plot = FALSE))
hi. <- hist(1:22, log = "x", plot = FALSE, warn.unused = FALSE) # no warning
noA <- \(x) `attributes<-`(x, NULL)
stopifnot(exprs = {
    nzchar(print(wmsg <- attr(hiW,"warning")))
    grepl(sQuote("log"), wmsg)
    identical(noA(hiW), noA(hi.))
})
## warning msg confusingly had '...' instead of 'log'


## requireNamespace(versionCheck) for loaded namespace #PR18255
versionCheck <- list(op = ">", version = getRversion())
           requireNamespace("stats", versionCheck = versionCheck) # did not show error
stopifnot(!requireNamespace("stats", versionCheck = versionCheck, quietly = TRUE))
## *not* successful, when versionCheck fails


## reading an empty file via gzcon() returned non-deterministic non-empty
## content (PR#18887)
fempty <- tempfile(tmpdir = getwd())
cat("", file=fempty)
gcon <- gzcon(file(fempty, "rb"))
lines2 <- readLines(gcon)
close(gcon)
stopifnot(identical(lines2, character(0)))
gcon <- gzfile(fempty, "rb") ## also test gzfile
lines <- readLines(gcon)
close(gcon)
stopifnot(identical(lines, character(0)))
unlink(fempty)


## concatenated gzipped streams were not supported by gzcon
fconcat <- tempfile(tmpdir = getwd())
gcon <- gzfile(fconcat, "w")
cat("Hello ", file=gcon)
close(gcon)
gcon <- gzfile(fconcat, "a")
cat("World\n", file=gcon)
close(gcon)
gcon <- gzcon(file(fconcat, "rb"))
lines2 <- readLines(gcon)
close(gcon)
stopifnot(identical(lines2, "Hello World"))
gcon <- gzfile(fconcat, "rb") ## also test gzfile
lines <- readLines(gcon)
close(gcon)
stopifnot(identical(lines, "Hello World"))


## Fading out "slave" terminology in {tcltk} -- PR#17835
if(require("tcltk")) withAutoprint({ # some setups may lack tcltk (right ?)
  tclServiceMode(FALSE) # no display
  top <- tktoplevel()
  (ww <- tryCatch(tkpack.slaves(top), warning=identity))
  if(package_version(tcltk::tclVersion()) >= "8.6")
      stopifnot(exprs = {
          inherits(ww, "deprecatedWarning")
          identical(ww$new, "tkpack.child")
      })
  detach("package:tcltk", unload=TRUE)
})
## three tk*.slaves() should be substituted by tk*.child()


## invalid `versionCheck` should error even when `quietly`
assertErrV( requireNamespace("tcltk", quietly = TRUE, versionCheck = "999.0") )
## silently returned FALSE previously, leading to further confusion


## rep() error messages -- PR#18926
repXerr <- quote({
    rep(1,   times = 4503599627370496, each = 2)
    rep(1:2, times = 4503599627370496)
    rep(1:2^30,                         each = 2^31+2)
    rep(1:(2^31+1),                     each = 2^31+2)

    rep(1:(2^31+1), times = 1:(2^31+3), each = 2^31+2)
    rep(1:3, times = 1:3, each = 0)
    rep(1:3, times = 1:3, each = 2)

    rep(1, times = -1)
    rep(1, times = NA)
    rep(1:3, times = 1:4)
    rep(1:(2^31+1), times = 1:(2^31+3))
})
writeLines(repE <- vapply(repXerr[-1L], \(xpr) tryCatch(eval(xpr), error=conditionMessage), "<err>"))
if (.Machine$sizeof.pointer == 8)
    stopifnot(identical(repE, repE[c(rep(1,4), rep(5,3), rep(8,4))]))
if(englishMsgs)
    stopifnot(exprs = {
        identical(repE[[1]],
                  if (.Machine$sizeof.pointer == 4) "invalid 'times' argument"
                  else "length(x) * 'times' * 'each' is too large")
        identical(repE[[7]], "invalid 'times' argument, given the value of 'each'")
        identical(repE[[8]], "invalid 'times' argument")
    })
## in all cases, msg was "invalid 'times' argument"; in some cases, misleadingly


## implement chkDots's  `allowed` argument -- PR#18936
f <- function(...) chkDots(..., allowed = "foo")
stopifnot(is.null(f()),
          is.null(f(foo = 1))) # NB  warn = 2
assertWarnV(f(bar = "foo"))
assertWarnV(f(bar = "foo", foo = 2))
assertWarnV(f(1, 2))
r <- getVaW(f(1, foo=2), TRUE)
stopifnot(r == quote(._NULL_()),
          inherits(print(attr(r, "warning")), "chkDotsWarning"))
## _classed_ warning


## implement messageCondition and use it in packageStartupMessage
classes <- c("testMessage", "message", "condition")
tools::assertCondition(message(messageCondition("a test", class = "testMessage")),
                       classes) |> suppressMessages()
classes <- c("packageStartupMessage", "simpleMessage", "message", "condition")
tools::assertCondition(packageStartupMessage("a startup message"),
                       classes) |> suppressMessages()
suppressPackageStartupMessages(packageStartupMessage("shouldn't see me"))


## "dumping" nothing to an existing connection was an error in R <= 4.5
## PR#18729
tmpfile <- tempfile()
con <- file(tmpfile, "w")
dump(character(), con)
close(con)
unlink(tmpfile)


## colSums() .. rowMeans() with complex z, where Re() and Im() contain NAs in different places.
## "Obviously correct" versions (w/o 'dims' arg):
colSumsC  <- function(x, na.rm = FALSE) apply(x, 2L,  sum, na.rm=na.rm)
rowSumsC  <- function(x, na.rm = FALSE) apply(x, 1L,  sum, na.rm=na.rm)
colMeansC <- function(x, na.rm = FALSE) apply(x, 2L, mean, na.rm=na.rm)
rowMeansC <- function(x, na.rm = FALSE) apply(x, 1L, mean, na.rm=na.rm)
y <- 1:12; y[c(2,3,5,7,11)] <- NA
(z <- matrix(complex(re = 12:1, im = y), 3))
##       [,1] [,2] [,3]  [,4]
## [1,] 12+1i 9+4i   NA 3+10i
## [2,]    NA   NA 5+8i    NA
## [3,]    NA 7+6i 4+9i 1+12i
stopifnot(!any(is.na(Re(z)))) # no NA's in real part
for(na in c(TRUE, FALSE))
  stopifnot(exprs = {
    identical(colSumsC (z, na.rm=na),
              colSums  (z, na.rm=na))
    identical(colMeansC(z, na.rm=na),
              colMeans (z, na.rm=na))
    identical(rowSumsC (z, na.rm=na),
              rowSums  (z, na.rm=na))
    identical(rowMeansC(z, na.rm=na),
              rowMeans (z, na.rm=na))
    identical(sum(colSums(z, na.rm=na)), sum(z, na.rm=na) -> sz)
    identical(sum(rowSums(z, na.rm=na)), sz)
  })
## almost all differed in R <= 4.5.1


## Ben Bolker + Kasper Kri...'s  PR#18946 -- lbeta(<complex>, *)
(Lb <- list(
    b1 = tryCid(  beta(1i, 1) )
  , b2 = tryCid(  beta(1, 1i) )
  , l1 = tryCid( lbeta(1i, 1) )
  , l2 = tryCid( lbeta(1, 1i) )
))
stopifnot(vapply(Lb, inherits, what="error", NA))
## l1 was not an error, but non-sense complex,  in R <= 4.5.1
stopifnot(identical(log10(1i), log(1i, 10)), log2(c(1,2,4) + 0i) == 0:2)
## (< 24h) lapsus "unimplemented complex fn."


## jitter():  more "robust"
ii5 <- rep(1000, 5)
i12 <- rep(1:4, each=3)
iI <- c(-Inf,  3,3,3)
assertWarnV(iN <- sqrt(-1:1)) # NaNs produced
set.seed(12)
(j1 <- jitter(ii5, factor = -1/4)) # ok - no longer NaN
(j2 <- jitter(i12, amount = -1/4)) #  (ditto)
(jI <- jitter(iI))
(jN <- jitter(iN))
stopifnot(990 < j1, j1 < 1010, 0.9 < j2, j2 < 4.4,
          jI[1] == -Inf, 2.9 < jI[-1], jI[-1] < 3.1,
          is.na(jN[1]), -1/4 < jN[-1], jN[-1] < 1.1)
## x in {Inf,NA,..} failed for 'd' computation;  negative amount / factor gave NaN


## substr() / substring() -- allowing stop|last = NULL to mean "suffix" -- PR#18851
(nL <- nchar(Lstr <- strrep(paste(letters,collapse=""), 4e4))) # nchar(.) > 1e6
ss <- substring(Lstr, 1e6)
stopifnot(exprs = {
    nchar(ss) == nL - 1e6 + 1
    startsWith(ss, "nopqrst")
    endsWith  (ss, "xyz")
    identical(substring(ss, nchar(ss)-7), "stuvwxyz")
}) ## were all FALSE in R <= 4.5.1: `last = 1000000L' was not large enough


## pretty(<very small>, eps.correct=2) would produce huge vectors
assertWarnV(pp <- .pretty(c(0, 1e-322), eps.correct = 2))
str(pp)
E <- 2e-314
stopifnot(all.equal(list(l = -E, u = E, n = 2L), pp, tolerance = 1e-12))
## n = 1112538 (Lnx 64b) in R <= 4.5.1  ^^^^^^


## poly(<factor>, .)
hf <- c(-1, 1.2, -1.5, -0.75, -2)
x <-  c("c", "b", "a",  "b", "a")
xf <- as.factor(x)
xo <- as.ordered(x)
tools::assertError(verbose=TRUE, lm(hf ~ poly(x, 2)))
tools::assertError(verbose=TRUE, lm(hf ~ poly(xf, 2)))
coef(om <- lm(hf ~ poly(xo, 2)))
stopifnot(
    all.equal(coef(om), tolerance = 5e-5,
              c("(Intercept)" = -0.81, "poly(xo, 2)1" = 1.01, "poly(xo, 2)2" = -1.7105)))
## poly(xf, .) gave no error in R 4.1.1--4.5.x


## PR#15275
## terms.formula(x, ...) when RHS of 'x' has logical/numeric NA;
## "equal" variables were not matched
chkv <- function(formula, variables, do.eval = FALSE)
    identical(attr(terms(formula), "variables") |> print(),  ## MM: print() just for testing with prev R
              if(do.eval) variables else substitute(variables))
stopifnot(exprs = { ## logical/numeric mixtures:
    ## equal non-NA were matched, equal NA were not
    chkv(~x + f(FALSE) + f(FALSE) + g(NA) + g(NA),
     list(x,  f(FALSE),             g(NA)))
    chkv(~x + f(FALSE) + f(FALSE) + g(NaN) + g(NaN),
     list(x,  f(FALSE),             g(NaN)))
    chkv(~x + f(FALSE) + f(0L) + g(NA) + g(NA_integer_),
     list(x,  f(FALSE),          g(NA)))
    chkv(~x + f(FALSE) + f(0) + g(NA) + g(NA_real_),
      list(x, f(FALSE),         g(NA)))
    ## complex: matching never supported; chkv() |-> TRUE
    chkv(~x + f(0) + f(0i) + g(NA_real_) + g(NA_complex_),
     list(x,  f(0),  f(0i),  g(NA_real_),  g(NA_complex_)))
    chkv(~x + f(0i) + f(0i) + g(NA_complex_) + g(NA_complex_),
     list(x,  f(0i),  f(0i),  g(NA_complex_),  g(NA_complex_)))
    ## character: matching always supported (only w/o mixture)
    chkv(~x + f(0) + f("0") + g(NA_real_) + g(NA_character_),
     list(x,  f(0),  f("0"),  g(NA_real_),  g(NA_character_)))
    chkv(~x + f("0") + f("0") + g(NA_character_) + g(NA_character_),
     list(x,  f("0"),           g(NA_character_)))
    ## "extra": it was possible to trigger STRING_ELT(<empty>, 0)
    {
        e <- list(. = character(0L))
        chkv(as.formula(substitute(~x + f(.) + f(.), e)),
             substitute(list(x, f(.)), e), do.eval = TRUE)
    }
})
## now does match f(NA) etc correctly


## check that dim and dimnames are dropped when extending with GROWABLE
x <- 1:49
x[50] <- 50L
dim(x) <- c(25, 2)
dimnames(x) <- list(NULL, c("a", "b"))
a <- .Internal(address(x))
x[51] <- 51L
stopifnot(identical(a, .Internal(address(x)))) ## reused x
stopifnot(is.null(attributes(x))) ## dim and dimnames have been dropped
## dim and dimnames were kept in R <= 4.5.z


## all.equal(*, check.class=FALSE)
two <- structure(2, foo = 1, class = "bar")
c2 <- `storage.mode<-`(two, "character")
r2 <- `storage.mode<-`(two, "raw")
stopifnot(exprs = {
    is.character(ae <- all.equal(two^20, 2^20, check.attributes = FALSE))
    grepl(" bar.* numeric", ae)
    ## above were TRUE already, these did *still* check class:
    all.equal(two^20,  2^20, check.attributes = FALSE, check.class = FALSE)
    all.equal(c2,       "2", check.attributes = FALSE, check.class = FALSE)
    all.equal(r2, as.raw(2), check.attributes = FALSE, check.class = FALSE)
})
## 'check.class' was not passed downstream in R <= 4.5.2


## diff(x=<m-by-n>, l, d) dropped dimensions when l*d >= m
m <- provideDimnames(matrix(0, 10L, 1L))
names(dimnames(m)) <- c("row", "col")
.difftime1 <- .difftime # diff() shouldn't hard code units="days"
formals(.difftime1)$units <- "secs"
##' list_(a, b, cc)  creates a *named* list  using the actual arguments' names
list_ <- function(...) `names<-`(list(...), vapply(sys.call()[-1L], as.character, ""))
L <- lapply(list_(identity, ts, .Date, .POSIXct, .difftime1),
            \(fn) { fnm0 <- (fnm <- fn(m))[0L, , drop = FALSE]
                list(f0 = fnm0, f = diff(fnm, lag = 2L, differences = 5L)) })
str(L, give.attr=FALSE) # now  0 x 1  matrices
  vapply(L, \(.) identical(.$f0, .$f), NA) # where all FALSE; now not all TRUE
stopifnot( print(
  vapply(L, \(.) identical(.$f0 - .$f0, .$f), NA) ) )
## were all FALSE : diff(fnm, 2,5) was not a matrix
m <- ts(matrix(1)) # ts-matrix boundary case
assertWarnV(d1 <- m - lag(m, -1)) # "non-intersecting series"
d2 <- diff(m)
stopifnot(identical(d1,d2), identical(dim(d1), 0:1))
## both d1 & d2 were *not* matrix  in R <= 4.5.2


## str.{Date,POSIXt}(<length 0>, give.attr=FALSE) - now works
chk0 <- function(x) identical(capture.output(str(x,  give.attr = FALSE)),
                              capture.output(str(`attr<-`(x, "foobar", NULL))))
stopifnot(chk0(structure(.Date   (numeric()), foobar = list(Dt = "A"))),
          chk0(structure(.POSIXct(numeric()), foobar = list(ct = "C"))))
## in R <= 4.5.2, give.attr=FALSE was not obeyed for 0-length "Date" / "POSIXt"

## guard against mutation through active bindings
y <- 1 + 0
if (exists("x")) rm(x)
makeActiveBinding("x", function(v) y, .GlobalEnv)
x[1] <- 2
stopifnot(y == 1)
rm(x)

## PR#18304 -- recycling `nvec` argument of sequence.default()
chkS <- function(n, nvec, recyc=FALSE) {
    lxn <- rep.int(1L, n)
    stopifnot(exprs = {
	identical(sequence.default(from = lxn, by = 1L, nvec = nvec, recycle=recyc),
		  sequence.default(from = 1L, by = lxn, nvec = nvec, recycle=recyc) -> s1)
        is.integer(s2 <- unlist(mapply(seq, from = lxn, by = 1L,
                                       length.out = rep_len(nvec, n),# <- to avoid warning: longer argument
									# not a multiple of length of shorter
				       SIMPLIFY=FALSE, USE.NAMES=FALSE)))
        identical(s1, if(recyc || n <= length(nvec)) s2 else s2[seq_along(s1)])
    })
    s1
}
for(recycl in c(FALSE, TRUE)) withAutoprint({
    cat("\n>>>> recycl: ", recycl, "-----\n",strrep("-", 25),"\n", sep="")
    ## These all worked identically previously:
    chkS(1, 1,   recyc = recycl) # 1
    chkS(2, 1:2, recyc = recycl) # 1,  1 2
    chkS(3, 1:3, recyc = recycl) # 1,  1 2,  1 2 3
    chkS(3, 3:1, recyc = recycl) # 1 2 3,  1 2,  1
    chkS(4, 1:4, recyc = recycl) # 1,  1 2,  1 2 3,  1 2 3 4
    chkS(4, 4:1, recyc = recycl) # 1 2 3 4,  1 2 3,  1 2,  1
    chkS(5, 1:5, recyc = recycl) # 1,   1 2,   1 2 3,   1 2 3 4,   1 2 3 4 5
    ## These did not:  length(nvec) < n :
    if(recycl)           chkS(3, 2:3, recyc = TRUE)
    else { rF <- getVaW( chkS(3, 2:3, recyc = FALSE) )
       ## the very first produces a  __once per R session__ warning:
       if(!is.null(wrn <- attr(rF, "warning"))) {
         cat("Caught warning: ")
         writeLines(wrn) }       #          recycl: FALSE  ||  TRUE
       as.vector(rF) }           # 1 2, 1 2 3              ||  1 2, 1 2 3, 1 2
    chkS(5, 2:3, recyc = recycl) # 1 2, 1 2 3              ||  1 2, 1 2 3, 1 2, 1 2 3, 1 2
    chkS(6, 2:3, recyc = recycl) # 1 2, 1 2 3              ||  1 2, 1 2 3, 1 2, 1 2 3, 1 2, 1 2 3
    chkS(4, 2:1, recyc = recycl) # 1 2, 1                  ||  1 2, 1, 1 2, 1
    chkS(4, 5:6, recyc = recycl) # 1 2 3 4 5, 1 2 3 4 5 6  ||  1 2 3 4 5, 1 2 3 4 5 6, 1 2 3 4 5, 1 2 3 4 5 6
    chkS(5, 1:4, recyc = recycl) # 1, 1 2, 1 2 3, 1 2 3 4  ||  1, 1 2, 1 2 3, 1 2 3 4, 1
    ## the last 6 cases all failed chkS() for recycle = TRUE
})


## <1d-arrary>[<name>] <- <val>  -- dropped dim & dimnames in transforming to atomic vector -- PR#18973
mk1d <- function(N) {
    stopifnot(length(N) == 1, N >= 1, is.integer(n <- 1:N))
    array(n, dimnames = list(letters[n]))
}
chk1d <- function(a)
    stopifnot(is.array(a), length(d <- dim(a)) == 1L, is.list(dn <- dimnames(a)), length(dn) == 1L)
str(x <- mk1d(3)); chk1d(x)
x[1]   <- 99 ; chk1d(x)
x["a"] <- 100; chk1d(x)
## x["a"] <- .. did drop dim() & dimnames() {getting names() instead}.


## error message when length(dim) == 0:
(m1 <- tryCmsg(array(NULL )))
(m2 <- tryCmsg(array(,NULL)))
if(englishMsgs)
  stopifnot(grepl(" was 'NULL'",   m1, fixed=TRUE),
            grepl("'dim' cannot ", m2, fixed=TRUE))
## had 'dims'

## this legal, though strange, code fails used to fail with
## Error: object '*tmp*' not found
f <-function(x, y) x
`f<-` <- function(x, y, value) { y; x}
x <- 1
y <- 2
f(x, y[] <- 1) <- 3


## Conversion of LaTeX accents in more bibentry fields
bib <- bibentry("book", author = person("Anonymous"), title = "Title", year = 1,
                publisher = "Universidad de Ja{\\'e}n",
                series = "Os {Economistas}")
(rd <- tools::toRd(bib)) # formatBook() from the default "JSS" style
stopifnot(endsWith(rd, "Ja\u00e9n."), grepl("Os Economistas", rd))
## Publisher and Series were not subject to cleanupLatex() in R <= 4.5.2

## After adding bounds checking in STRING_ELT this use to signal an
## error in a barrier build.
order(NA_character_, 'c', method = 'radix', na.last = NA)


## provideDimnames(use.names=) for names(dimnames(.))
pDF <- provideDimnames
formals(pDF)$base <- quote(list("uu" = "a", "vv" = "b"))
pDT <- pDF
formals(pDT)$use.names <- TRUE
dn <- function(x, dn = dimnames(x))
    if(!is.null(dn)) list(names(dn), `names<-`(dn, NULL))
dnF <- function(...) dn(pDF(...))
dnT <- function(...) dn(pDT(...))
(N4 <- N4. <- array(0, rep(1L, 4L)))
dimnames(N4.) <- `names<-`(vector("list", 4L), c("ww", "", "", ""))
N4.
L4 <- L4. <- list(NULL, list("a", "b", "a", "b"))
L4.[[1L]] <- names(dimnames(N4.))
stopifnot(identical(dnF(N4 ), L4 ),
          identical(dnF(N4.), L4.),
          identical(dnT(N4 , sep = "~"),
                    `[[<-`(L4 , 1L, c("uu", "vv", "uu~1", "vv~1"))),
          identical(dnT(N4., unique = FALSE),
                    `[[<-`(L4., 1L, c("ww", "vv", "uu"  , "vv"  ))),
          ## now composition ('T' always wins):
          vapply(list(N4, N4.),
                 function(.) identical(pDF(pDF(.)), pDF(.)) &&
                             identical(pDF(pDT(.)), pDT(.)) &&
                             identical(pDT(pDF(.)), pDT(.)) &&
                             identical(pDT(pDT(.)), pDT(.)),	NA))


## besselJ(pi/22, 1e-15) anomaly, R-help, 28 Dec 2025, Leo Mada
x <- 0:41; bJ <- besselJ(0:41, 1e-15)
bJ16xct <-
    c(0, 0.76519769, 0.22389078, -0.26005195, -0.39714981, -0.17759677,
      0.15064526, 0.30007927, 0.17165081, -0.090333611, -0.24593576,
      -0.1711903, 0.047689311, 0.2069261, 0.17107348, -0.014224473)
all.equal(bJ16xct, bJ[1:16], tolerance=0) # 8.3888e-9 [was +1e15 since r32446, 2005-01-03]
stopifnot(all.equal(bJ16xct, bJ[1:16]),
          max(abs(bJ[17:42])) < 0.175)
## besselJ(x, nu)'s C code now works for very small nu


## pretty(<char>) bug introduced > 15 yrs ago
stopifnot(identical(20 * 0:5, pretty(c("1", "9", "100"))))
## wrongly gave  0 2 4 6 8 10


## summary() of an empty character vector (after PR#16750)
stopifnot(all.equal(summary(nchar(character()))[c("Min.", "Max.")] |> print(),
                    summary(character())[c("Min.nchar", "Max.nchar")],
                    check.names = FALSE))
## gave +-Inf (with warnings) rather than NA, for a few days in the trunk


## asymmetric  toeplitz(x, r), when length(r) < 2 and {x, r} differ by type -- PR#18996
chkToep <- function(tx, lx, tr, lr) {
    x <- vector(tx, lx)
    r <- vector(tr, lr)
    identical(toeplitz(x, r), matrix(c(FALSE, x[0L], r[0L]), lx, lr))
}
t3 <- c("integer", "double", "complex")
i02 <- 0L:2L
tail(L <- expand.grid(tx=t3, lx=i02, tr=t3, lr=i02,
                      KEEP.OUT.ATTRS = FALSE, stringsAsFactors=FALSE))
stopifnot(unlist(.mapply(chkToep, L, NULL)))
## had 18 (out of 81) FALSE in R <= 4.5.z


## format(<named raw>):
rr <- as.raw(seq(0, 255, by = 7))
names(rr) <- nn <- outer(c(LETTERS, letters), c("","_"), paste0)[seq_along(rr)]
head(fr <- format(rr))
stopifnot(identical(names(fr), nn))
## lost names() in R <= 4.5.z


## rep.int() and rep_len() on factor had names, not as documented -- PR#18999
## From example in ?rep
x <- factor(LETTERS[1:4]); names(x) <- letters[1:4]
stopifnot(is.null(names(rep.int(x, 2))),
          is.null(names(rep_len(x, 10))))
## had names in 4.0.0 <= R <= 4.5.z because of dispatch to rep() method


## str(<obj_w_method using NextMethod>) -- PR#19001
aa <- grid::arrow(type = "closed")
writeLines(stro <- capture.output(str(aa, give.attr=FALSE)))
noListof <- function(st) !grepl("list of ", st, ignore.case=TRUE)
stopifnot(noListof(stro), length(stro) == 1 + 4)
## had extra 2nd line  "Class 'arrow'  hidden list of 4"
strSome <- str.someclass <- function(object, ...) {
    cat(if(is.null(pr <- attr(.Class, "previous")))
            sprintf("<%s> .Method for .Class '%s' (length %d)\n",
                    as.character(.Method), deparse1(.Class), length(object))
        else sprintf("<%s> .Method for .Class '%s' -- after previous '%s'\n",
                     as.character(.Method), deparse1(as.vector(.Class)), paste0(pr, collapse=","))
        )
    NextMethod()
}
x <- structure(list(a = 1, b = 2, c = 3), class = "someclass")
writeLines(str1 <- capture.output(str(x)))
rm(str.someclass) # and _register_ it ==> should str() identically:
.S3method("str", "someclass", strSome)
str2 <- capture.output(str(x))
getA3 <- list(name = "str.someclass", where = "registered S3 method for str", visible = FALSE)
stopifnot(exprs = {
    noListof(str2)
    identical(str1, str2)
    identical(getA3, unclass(getAnywhere("str.someclass"))[names(getA3)])
})
## str2 had extra line 'List of ..'   -- now one more level:
str.s2class <- strSome
x2  <- structure(list(a = 1, S = 2), class = c("s2class", "someclass"))
xs2 <- structure(list(a = 1, S = 2), class = c("someclass", "s2class"))
writeLines(strX2  <- capture.output(str(x2)))
writeLines(strXs2 <- capture.output(str(xs2)))
rm(str.s2class) # and _register_ it ...
.S3method("str", "s2class", strSome)
strX2.  <- capture.output(str(x2))
strXs2. <- capture.output(str(xs2))
stopifnot(identical(strX2 , strX2. ), noListof(strX2. ),
          identical(strXs2, strXs2.), noListof(strXs2.))
## strXs?2. did have 'List of' in R <= 4.5.z
proc.time() - .pt; .pt <- proc.time()


## simple test for R_GetBindingType
local({
    getBindingType <- function(sym, env = parent.frame()) {
        if (is.character(sym))
            sym <- as.name(sym)
        .Internal(getBindingType(sym, env))
    }
    f0 <- function() getBindingType("x")
    stopifnot(f0() == "unbound")
    f1 <- function() { x <- 1; getBindingType("x")}
    stopifnot(f1() == "value")
    f2 <- function(x) getBindingType("x")
    stopifnot(f2() == "missing")
    f3 <- function(x) getBindingType("x")
    stopifnot(f3(1) == "delayed")
    f4 <- function(x) { x; getBindingType("x")}
    stopifnot(f4(1) == "forced")
    f5 <- function() {
        makeActiveBinding("x", \(x) 1, environment())
        getBindingType("x")
    }
    stopifnot(f5() == "active")
})

## R_GetBindingType with promise chains from `...` expansion (PR#18928)
## Expanding `...` into named parameters creates promise chains where
## PRCODE of the wrapper is the original PROMSXP
local({
    getBindingType <- function(sym, env = parent.frame()) {
        if (is.character(sym))
            sym <- as.name(sym)
        .Internal(getBindingType(sym, env))
    }
    g <- function(x) getBindingType("x")
    # `...` expansion into a named parameter wraps the dot promise
    x <- 1
    f <- function(...) g(...)
    stopifnot(f(x) == "delayed")
    # Forcing the dot then expanding: unwrapping must detect the forced inner
    f <- function(...) { force(..1); g(...) }
    stopifnot(f(x) == "forced")
    # Deeper chain: `...` -> `...` -> named parameter
    mid <- function(...) g(...)
    f <- function(...) mid(...)
    stopifnot(f(x) == "delayed")
    # Force at the top of a deeper chain
    f <- function(...) { force(..1); mid(...) }
    stopifnot(f(x) == "forced")
})

## R_GetBindingType with symbol bindings (base namespace)
local({
    getBindingType <- function(sym, env) {
        if (is.character(sym))
            sym <- as.name(sym)
        .Internal(getBindingType(sym, env))
    }
    stopifnot(getBindingType("T", baseenv()) == "value")
    stopifnot(getBindingType("c", baseenv()) == "value")
    stopifnot(getBindingType(".TAOCP1997init", baseenv()) == "delayed")
    stopifnot(getBindingType(".Library.site", baseenv()) == "active")
    stopifnot(getBindingType("..nonexistent..", baseenv()) == "unbound")
})

## Binding accessors with symbol bindings (base namespace)
local({
    delayedExpr <- function(sym, env) {
        if (is.character(sym)) sym <- as.name(sym)
        .Internal(delayedBindingExpression(sym, env))
    }
    delayedEnv <- function(sym, env) {
        if (is.character(sym)) sym <- as.name(sym)
        .Internal(delayedBindingEnvironment(sym, env))
    }
    forcedExpr <- function(sym, env) {
        if (is.character(sym)) sym <- as.name(sym)
        .Internal(forcedBindingExpression(sym, env))
    }
    # `.TAOCP1997init` is lazily loaded in base. We're checking this one
    # because it's unlikely to have been forced by another test.
    expr <- delayedExpr(".TAOCP1997init", baseenv())
    stopifnot(is.language(expr))
    env <- delayedEnv(".TAOCP1997init", baseenv())
    stopifnot(is.environment(env))
    force(.TAOCP1997init)
    expr <- forcedExpr(".TAOCP1997init", baseenv())
    stopifnot(is.language(expr))
    # `.Library.site` is an active binding in base
    fn <- activeBindingFunction(as.name(".Library.site"), baseenv())
    stopifnot(is.function(fn))
})

## R_DelayedBindingExpression and R_DelayedBindingEnvironment
local({
    delayedExpr <- function(sym, env = parent.frame()) {
        if (is.character(sym)) sym <- as.name(sym)
        .Internal(delayedBindingExpression(sym, env = parent.frame()))
    }
    delayedEnv <- function(sym, env = parent.frame()) {
        if (is.character(sym)) sym <- as.name(sym)
        .Internal(delayedBindingEnvironment(sym, env))
    }
    e <- environment()
    x <- 1
    g <- function(x) delayedExpr("x")
    stopifnot(identical(g(x), quote(x)))
    g <- function(x) delayedEnv("x", environment())
    stopifnot(identical(g(x), e))
    # Through forwarded ...
    get_expr <- function(x) delayedExpr("x")
    get_env <- function(x) delayedEnv("x")
    f <- function(...) get_expr(...)
    stopifnot(identical(f(x), quote(x)))
    f <- function(...) get_env(...)
    stopifnot(identical(f(x), e))
    # Deeper chain
    mid_expr <- function(...) get_expr(...)
    f <- function(...) mid_expr(...)
    stopifnot(identical(f(x), quote(x)))
    mid_env <- function(...) get_env(...)
    f <- function(...) mid_env(...)
    stopifnot(identical(f(x), e))
})

## R_ForcedBindingExpression
local({
    forcedExpr <- function(sym, env = parent.frame()) {
        if (is.character(sym)) sym <- as.name(sym)
        .Internal(forcedBindingExpression(sym, env))
    }
    x <- 1
    g <- function(x) { force(x); forcedExpr("x") }
    stopifnot(identical(g(x), quote(x)))
    # Through forwarded ...
    get_expr <- function(x) { force(x); forcedExpr("x") }
    f <- function(...) get_expr(...)
    stopifnot(identical(f(x), quote(x)))
    # Forced at outer level, then forwarded into named param
    inner <- function(x) forcedExpr("x")
    f <- function(...) { force(..1); inner(...) }
    stopifnot(identical(f(x), quote(x)))
    # Deeper chain
    mid <- function(...) inner(...)
    f <- function(...) { force(..1); mid(...) }
    stopifnot(identical(f(x), quote(x)))
})

## R_DotsElt errors on missing dot argument
local({
    f <- function(...) ...elt(1)
    x <- 1
    stopifnot(identical(f(x), 1))
    stopifnot(inherits(tryCatch(f(, 1), error = identity), "missingArgError"))
    # This is another error path
    stopifnot(grepl("the ... list contains fewer than",
                    tryCatch(f(), error = conditionMessage)))
})

## simple test for R_GetDotType
local({
    getDotType <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(getDotType(i, env, inherits))
    g <- function(...) getDotType(1L, environment())
    x <- 1
    stopifnot(g(x) == "delayed")
    stopifnot(g(, 1) == "missing")
    h <- function(...) { force(..1); getDotType(1L, environment()) }
    stopifnot(h(x) == "forced")
})

## R_GetDotType with promise chains from `...` expansion
local({
    getDotType <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(getDotType(i, env, inherits))
    inner <- function(...) getDotType(1L)
    x <- 1
    f <- function(...) inner(...)
    stopifnot(f(x) == "delayed")
    # Forced inner, then forwarded
    f <- function(...) { force(..1); inner(...) }
    stopifnot(f(x) == "forced")
    # Deeper chain
    mid <- function(...) inner(...)
    f <- function(...) mid(...)
    stopifnot(f(x) == "delayed")
    f <- function(...) { force(..1); mid(...) }
    stopifnot(f(x) == "forced")
})

## R_DotDelayedExpression and R_DotDelayedEnvironment
local({
    dotDelayedExpr <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(dotDelayedExpression(i, env, inherits))
    dotDelayedEnv <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(dotDelayedEnvironment(i, env, inherits))
    get_expr <- function(...) dotDelayedExpr(1L)
    get_env <- function(...) dotDelayedEnv(1L)
    e <- environment()
    x <- 1
    stopifnot(identical(get_expr(x), quote(x)))
    stopifnot(identical(get_env(x), e))
    # Through forwarded ...
    outer_expr <- function(...) get_expr(...)
    outer_env <- function(...) get_env(...)
    stopifnot(identical(outer_expr(x), quote(x)))
    stopifnot(identical(outer_env(x), e))
    # Deeper chain
    mid_expr <- function(...) get_expr(...)
    deep_expr <- function(...) mid_expr(...)
    mid_env <- function(...) get_env(...)
    deep_env <- function(...) mid_env(...)
    stopifnot(identical(deep_expr(x), quote(x)))
    stopifnot(identical(deep_env(x), e))
})

## R_DotForcedExpression
local({
    dotForcedExpr <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(dotForcedExpression(i, env, inherits))
    get_expr <- function(...) dotForcedExpr(1L)
    x <- 1
    g <- function(...) { force(..1); dotForcedExpr(1L) }
    stopifnot(identical(g(x), quote(x)))
    # Forced inner, then forwarded
    h <- function(...) { force(..1); get_expr(...) }
    stopifnot(identical(h(x), quote(x)))
    # Deeper chain
    mid <- function(...) get_expr(...)
    h <- function(...) { force(..1); mid(...) }
    stopifnot(identical(h(x), quote(x)))
    # Forwarded dot forced in place (outermost wrapper is directly forced)
    inner_forced <- function(...) { force(..1); dotForcedExpr(1L) }
    f <- function(...) inner_forced(...)
    stopifnot(identical(f(x), quote(x)))
})


## R_DotsExist() returns TRUE for empty dots (R_MissingArg)
local({
    dotsExist <- function(env = parent.frame(), inherits = TRUE)
        .Internal(dotsExist(env, inherits))
    fn <- function(...) dotsExist()
    fn_no_dots <- function() dotsExist()
    stopifnot(
        isTRUE(fn()),
        isTRUE(fn(1)),
        isTRUE(fn(1, 2, 3)),
        isFALSE(fn_no_dots())
    )
    ## Non-DOTSXP values bound to `...`
    e <- new.env(parent = emptyenv())
    e$... <- NULL
    stopifnot(isFALSE(dotsExist(e)))
    e$... <- 1
    stopifnot(isFALSE(dotsExist(e)))
})

## C API: R_DotsExist() does not reach into parent environments (PR#18928)
## (positive tests above in "R_DotsExist() returns TRUE for empty dots")
local({
    dotsExist <- function(env = parent.frame(), inherits = TRUE)
        .Internal(dotsExist(env, inherits))
    fn <- function(...) local(dotsExist(inherits = FALSE))
    stopifnot(isFALSE(fn()))
    stopifnot(isFALSE(fn(1)))
    stopifnot(isFALSE(fn(1, 2, 3)))
})

## C API: R_DotsLength() does not reach into parent environments (PR#18928)
local({
    dotsLength <- function(env = parent.frame(), inherits = TRUE)
        .Internal(dotsLength(env, inherits))
    fn <- function(...) local(dotsLength(inherits = FALSE))
    stopifnot(grepl("incorrect context",
                    tryCatch(fn(1, 2), error = conditionMessage)))
    ## Works when `...` is directly in the frame
    fn2 <- function(...) dotsLength(inherits = FALSE)
    stopifnot(
        fn2() == 0L,
        fn2(1) == 1L,
        fn2(1, 2, 3) == 3L
    )
    ## Works with forwarded dots
    inner <- function(...) dotsLength(inherits = FALSE)
    outer <- function(...) inner(...)
    stopifnot(outer(1, 2, 3) == 3L)
})

## C API: R_DotsNames() does not reach into parent environments (PR#18928)
local({
    dotsNames <- function(env = parent.frame(), inherits = TRUE)
        .Internal(dotsNames(env, inherits))
    fn <- function(...) local(dotsNames(inherits = FALSE))
    stopifnot(grepl("incorrect context",
                    tryCatch(fn(a = 1), error = conditionMessage)))
    ## Works when `...` is directly in the frame
    fn2 <- function(...) dotsNames(inherits = FALSE)
    stopifnot(
        identical(fn2(a = 1, b = 2), c("a", "b")),
        is.null(fn2(1, 2)),
        is.null(fn2())
    )
    ## Works with forwarded dots
    inner <- function(...) dotsNames(inherits = FALSE)
    outer <- function(...) inner(...)
    stopifnot(identical(outer(x = 10, y = 20), c("x", "y")))
})

## C API: R_DotsElt() does not reach into parent environments (PR#18928)
local({
    dotsElt <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(dotsElt(i, env, inherits))
    fn <- function(...) local(dotsElt(1L, inherits = FALSE))
    stopifnot(grepl("no ... to look in",
                    tryCatch(fn(42), error = conditionMessage)))
    ## Works when `...` is directly in the frame
    fn2 <- function(...) dotsElt(1L, inherits = FALSE)
    stopifnot(
        fn2(42) == 42,
        identical(fn2("hello"), "hello")
    )
    fn3 <- function(...)
        c(dotsElt(1L, inherits = FALSE), dotsElt(2L, inherits = FALSE))
    stopifnot(identical(fn3(10, 20), c(10, 20)))
    ## Works with forwarded dots
    inner <- function(...) dotsElt(1L, inherits = FALSE)
    outer <- function(...) inner(...)
    stopifnot(outer(99) == 99)
})

## C API: R_GetDotType() does not reach into parent environments (PR#18928)
local({
    getDotType <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(getDotType(i, env, inherits))
    fn <- function(...) local(getDotType(1L, inherits = FALSE))
    stopifnot(grepl("no ... to look in",
                    tryCatch(fn(1), error = conditionMessage)))
    ## (positive tests above in "simple test for R_GetDotType")
})

## C API: R_DotDelayedExpression()/Environment() do not reach parents
## (PR#18928) (positive tests above in "R_DotDelayedExpression and
## R_DotDelayedEnvironment")
local({
    dotDelayedExpr <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(dotDelayedExpression(i, env, inherits))
    dotDelayedEnv <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(dotDelayedEnvironment(i, env, inherits))
    x <- 1
    fn <- function(...) local(dotDelayedExpr(1L, inherits = FALSE))
    stopifnot(grepl("no ... to look in",
                    tryCatch(fn(x), error = conditionMessage)))
    fn2 <- function(...) local(dotDelayedEnv(1L, inherits = FALSE))
    stopifnot(grepl("no ... to look in",
                    tryCatch(fn2(x), error = conditionMessage)))
})

## C API: R_DotForcedExpression() does not reach parents (PR#18928)
## (positive tests above in "R_DotForcedExpression")
local({
    dotForcedExpr <- function(i, env = parent.frame(), inherits = TRUE)
        .Internal(dotForcedExpression(i, env, inherits))
    x <- 1
    fn <- function(...) {
        force(..1)
        local(dotForcedExpr(1L, inherits = FALSE))
    }
    stopifnot(grepl("no ... to look in",
                    tryCatch(fn(x), error = conditionMessage)))
})

## R API: ...length() retains inherited scoping (PR#18928)
local({
    ## Through local()
    f <- function(...) local(...length())
    stopifnot(
        f(1, 2, 3) == 3L,
        f() == 0L,
        f(1) == 1L
    )
    ## Through nested function without `...`
    f2 <- function(...) {
        g <- function() ...length()
        g()
    }
    stopifnot(f2(1, 2) == 2L)
    ## Deeper nesting
    f3 <- function(...) {
        g <- function() {
            h <- function() ...length()
            h()
        }
        g()
    }
    stopifnot(f3(1, 2, 3, 4) == 4L)
    ## Direct call still works
    f0 <- function(...) ...length()
    stopifnot(f0(1, 2) == 2L)
})

## R API: ...names() retains inherited scoping (PR#18928)
local({
    ## Through local()
    f <- function(...) local(...names())
    stopifnot(
        identical(f(a = 1, b = 2), c("a", "b")),
        is.null(f(1, 2)),
        is.null(f())
    )
    ## Through nested function without `...`
    f2 <- function(...) {
        g <- function() ...names()
        g()
    }
    stopifnot(identical(f2(x = 10, y = 20), c("x", "y")))
    ## Direct call still works
    f0 <- function(...) ...names()
    stopifnot(identical(f0(a = 1), "a"))
})

## R API: ...elt() retains inherited scoping (PR#18928)
local({
    ## Through local()
    f <- function(...) local(...elt(1))
    stopifnot(f(42) == 42)
    ## Through nested function without `...`
    f2 <- function(...) {
        g <- function() ...elt(2)
        g()
    }
    stopifnot(f2("a", "b") == "b")
    ## Deeper nesting
    f3 <- function(...) {
        g <- function() {
            h <- function() ...elt(1)
            h()
        }
        g()
    }
    stopifnot(f3(99) == 99)
    ## Direct call still works
    f0 <- function(...) ...elt(1)
    stopifnot(f0(7) == 7)
    ## Multiple elements through nested scope
    f4 <- function(...) {
        g <- function() c(...elt(1), ...elt(2))
        g()
    }
    stopifnot(identical(f4(10, 20), c(10, 20)))
    ## Named dots
    f5 <- function(...) local(...elt(2))
    stopifnot(f5(a = 1, b = 2) == 2)
})

## R API errors when no `...` in scope at all (PR#18928)
local({
    f <- function() ...length()
    stopifnot(grepl("incorrect context",
                    tryCatch(f(), error = conditionMessage)))
    g <- function() ...elt(1)
    stopifnot(grepl("no ... to look in",
                    tryCatch(g(), error = conditionMessage)))
    h <- function() ...names()
    stopifnot(grepl("incorrect context",
                    tryCatch(h(), error = conditionMessage)))
    ## Also through local()
    f <- function() local(...length())
    stopifnot(grepl("incorrect context",
                    tryCatch(f(), error = conditionMessage)))
    g <- function() local(...elt(1))
    stopifnot(grepl("no ... to look in",
                    tryCatch(g(), error = conditionMessage)))
    h <- function() local(...names())
    stopifnot(grepl("incorrect context",
                    tryCatch(h(), error = conditionMessage)))
})

## R API: `...` overwritten with non-DOTSXP skips frame (PR#18928)
local({
    ## Overwritten in current frame: R_findDotsEnv skips it, errors
    f <- function(...) { "..." <- 1; ...elt(1) }
    stopifnot(grepl("no ... to look in",
                    tryCatch(f(1), error = conditionMessage)))
    f <- function(...) { "..." <- 1:2; ...length() }
    stopifnot(grepl("incorrect context",
                    tryCatch(f(1), error = conditionMessage)))
    f <- function(...) { "..." <- NULL; ...names() }
    stopifnot(grepl("incorrect context",
                    tryCatch(f(a = 1), error = conditionMessage)))
    ## Overwritten in local(): R_findDotsEnv skips local, finds parent
    f <- function(...) local({ "..." <- 1; ...elt(1) })
    stopifnot(f(42) == 42)
    f <- function(...) local({ "..." <- NULL; ...length() })
    stopifnot(f(1) == 1L)
    stopifnot(f(1, 2, 3) == 3L)
    f <- function(...) local({ "..." <- 1; ...names() })
    stopifnot(identical(f(a = 1, b = 2), c("a", "b")))
})
proc.time() - .pt; .pt <- proc.time()


## checking isa() consistency, notably S3 vs S4
setClass("z4", contains = "numeric")
setClass("zz4", contains = "z4")
z3  <- `class<-`(0, "z3")
zz3 <- `class<-`(1, c("zz3", "z3"))
z4  <- new("z4", 0)
zz4 <- new("zz4",1)
stopifnot(isa(z4, "z4"), isa(zz4, "z4"), !isa(z4, "zz4"),
          isa(z3, "z3"), isa(zz3, "z3"), !isa(z3, "zz3"),
          removeClass("zz4"), removeClass("z4"))
## union() needed adaptation (fumbled in r89677 before correction):
x <- factor(c("a", "b", "a"))
y <- factor(c("b", "c"))
(uxy <- union(x, y))
stopifnot(identical(uxy, factor(c("a", "b", "c"))))
## levels were  b c a  for a few days


## Context stack overflow checks (PR#18458)
nTXT <- 50 # gram.y has   #define CONTEXTSTACK_SIZE 50
txtL <- list(brace = strrep("{", nTXT),
             paren = strrep("(", nTXT),
             brack = strrep("x[", nTXT),
             brac2 = strrep("x[[", nTXT %/% 2),
             cmpIf = paste0("{", strrep("if(1)", nTXT), "}"))
E <- lapply(txtL, \(txt) tryCid(parse(text = txt)))
E[[1]]
(isErr <- vapply(E, isa, NA, what = c("contextstackOverflow", "parseError", "error")))
stopifnot(isErr)
## Used to segfault with ASAN due to off-by-one in context stack checks


## out of bounds errors for arrays should include the subscript number
stopifnot(identical(tryCatch(matrix(1:6, nrow = 2)[3, 1],
                             error = identity)$subscript,
                    1L))
proc.time() - .pt


## Check that headers, WRE, and non-API variables are in sync
tools:::checkAPI() |> system.time() ; .pt <- proc.time()
## New functionality, takes a few secs


## cut(*, <empty breaks>) -- PR#19057
assertErrV( cut(1:3, {}) )
## gave an <NA> vector w/ bizarre levels in R <= 4.6.0


## Tailcall in non-tail position: jump, like return()
stopifnot((function() 1 + Tailcall(log, 1))() == 0)

## Tailcall does not stop at context in .Internal(eval()), unlike return()
local({
    f <- function(x) {
        e <- environment()
        g <- function(x) evalq(Tailcall(identity, x), e)
        g(x)
        "B"
    }
    stopifnot(identical(f("A"), "A"))
})

## Tailcall handles substitute() missing args in caller like S3 dispatch
local({
    f <- function(x) Tailcall(function(y) substitute(y), x)
    stopifnot(identical(f(1 + 2), quote(1 + 2)))
    g <- function(x) Tailcall(function(y = 1) y, x)
    stopifnot(g() == 1)
})

## Tailcall handles parent.frame() like caller
f <- function() Tailcall(function() parent.frame())
e <- f()
stopifnot(identical(e, .GlobalEnv))


## In a  --disable-nls configuration, "0 things" should remain plural; PR#19065
mE <- tryCid( sin() )
stopifnot(inherits(mE, "error"))
if(englishMsgs)
    stopifnot(grepl("0 arguments passed to 'sin'", conditionMessage(mE)))
## gave "0 argument passed .." in R <= 4.6.0 (--disable-nls)


## as.data.frame.vector() with NA rownames -- PR#19059
e1 <- tryCid( as.data.frame(setNames(11:12, c("a", NA))) ) ## and the same, explicitly:
e2 <- tryCid( as.data.frame(         11:12, c("a", NA))  )
writeLines(as.character(e1))
stopifnot(identical(e1$message, e2$message), identical(class(e1), class(e2)))
## gave a data frame with `NA` in row names, in R <= 4.6.0
dftN <- as.data.frame(tab <- table(ff <- penguins$sex, useNA = "ifany"))
stopifnot(identical(3:2, dim(dftN)),
          identical(structure(c(1:2, NA), levels = levels(ff), class = "factor"),
                    dftN[,"Var1"]))
## as.DF(<tab_w_NA>) failed after first fix ..


## <symbol> -> <logical> etc via C level coerceSymbol() -- PR#19054
assertErrV( all(quote(symbool)) )
assertErrV( any(quote(symbool)) )
## gave warnings but then TRUE or FALSE in R <= 4.6.0
proc.time() - .pt; .pt <- proc.time()


## Platform dependently, stl(.) could severely misbehave when compiled by flang 22, -O2
sw <- 0:16
r1 <- lapply(sw, function(sWin) stl(ts(rep(1:3, 3), frequency = 3), s.window = sWin))
R1 <- lapply(sw, function(sWin) stl(ts(rep(1:3, 3), frequency = 3), s.window = sWin, robust=TRUE))
chk1 <- function(stl) {
    cat("<stl>$win: ", substring(deparse(stl$win), 2),
           "; jump: ", substring(deparse(stl$jump), 2),"\n", sep="")
    if(any(abs(stl$weights - 1) > 1e-7))
        cat(" varying weights:  ", sprintf("%.3g", stl$weights), "\n")
    stopifnot(is.list(stl), inherits(stl, "stl"),
              identical(stl$deg, c(s=0L, t=1L, l=1L)),
              is.matrix(mts <- stl$time.series), inherits(mts, "mts"),
              identical(c(9L, 3L), dim(mts)),
              identical(c("seasonal", "trend", "remainder"), colnames(mts)))
}
(swU <- pmax(3L, ifelse(sw %% 2 == 1, sw, sw+1L))) # effectively used s.window
invisible(lapply(r1, chk1))
cat("\n robust=TRUE :\n ===========\n")
invisible(lapply(R1, chk1))
Seasr <- vapply(r1, function(stl) stl$time.series[,"seasonal"], numeric(3*3))
SeasR <- vapply(R1, function(stl) stl$time.series[,"seasonal"], numeric(3*3))
Trndr <- vapply(r1, function(stl) stl$time.series[,"trend"],    numeric(3*3))
TrndR <- vapply(R1, function(stl) stl$time.series[,"trend"],    numeric(3*3))
aremr <- abs(vapply(r1, function(stl) stl$time.series[,"remainder"], numeric(3*3)))
aremR <- abs(vapply(R1, function(stl) stl$time.series[,"remainder"], numeric(3*3)))
stopifnot(exprs = {
    ## s.window = 0 is now *equivalent* to s.window = 1:
    identical(r1[[1]], r1[[2]])
    identical(R1[[1]], R1[[2]])
    ## Seasonal
    print(max(abs(Seasr - rep(-1:1, 3)))) < 1e-13
    print(max(abs(SeasR - rep(-1:1, 3)))) < 1e-13
    print(max(Trndr - 2)) < 1e-13
    print(max(TrndR - 2)) < 1e-13
    print(max(aremr)) < 1e-13 # 2.22e-15 was 1.24e-14
    print(max(aremR)) < 1e-13 # 2.88e-15
})
## partly "exploded" (dumped core), partly did not return constant trend =~= 2


## PR#19072
stopifnot(identical(attributes(.leap.seconds), list(class = c("POSIXct", "POSIXt"))))
## .leap.seconds have no "tzone" attribute (as in R < 4.1.0)


## zapsmall(x, digits = Inf)  should return x even when that contains +/-Inf
zapEx <- function(x) rbind(x = x,
          z    = zapsmall(x, 50),             zd_4 = zapsmall(x, 50, min.d = -444),
          zdI  = zapsmall(x, 50, min.d = -Inf), zI = zapsmall(x, Inf),
          zIdI = zapsmall(x, Inf,min.d = -Inf))
x2 <- pi * 100^(-2:2)/10; xI <- c(x2, Inf); Ix <- c(-Inf, x2); xII <- c(Ix, Inf)
stopifnot(exprs = {
    zapEx(x2) == rep(x2, each = 6)
    is.finite(t(print(zapEx(xI)))) == is.finite(xI)
    is.finite(t(      zapEx(Ix ))) == is.finite(Ix)
    is.finite(t(z <-  zapEx(xII))) == is.finite(xII)
    !anyNA(z)
    identical(z["zI" , ], xII)
    identical(z["zIdI",], xII)
    identical(z["zd_4",], z["zdI",])
})
## the last two rows of z[,] were all NaN in R <= 4.6.0
proc.time() - .pt; .pt <- proc.time()


### wilcox.test(x, exact=FALSE, correct = k), k >= 1  had been missing '* dnorm(z)'
##
## all possible 'correct = *' settings { correct = 0  <===>  correct = TRUE } :
corrs <- list(FALSE, TRUE, 1L, 2L, 3L)
names(corrs) <- vapply(corrs, as.character, "")
##
##' Compute exact and asymptotic (_incl_ Edgeworth corrections) Wilcoxon test p-values
##' (also to be used in further changes, incl  2-sample test)
wilcoxAsymp <- function(x, y = NULL, xO = 100* max(abs(x)), yO = Inf,
                      debug = getOption("verbose"), ...) {
    P <- if(debug) print else identity
    xo <- c(x, xO)
    if(is.null(y) || !length(y)) { ##---------- 1-sample  : *_one_pval_asymp() ----------------------
        ## 'X' := eXact
        pv1X  <- P(wilcox.test(x , exact=TRUE, ...))$p.value
        pv1Xo <- P(wilcox.test(xo, exact=TRUE, ...))$p.value
        L1. <- lapply(corrs, function(cr) wilcox.test(x , exact=FALSE, correct = cr, ...))
        L1o <- lapply(corrs, function(cr) wilcox.test(xo, exact=FALSE, correct = cr, ...))
        list(pval    = c(vapply(L1., `[[`, 0.1, "p.value"), Xact = pv1X),
             pvalOut = c(vapply(L1o, `[[`, 0.1, "p.value"), Xact = pv1Xo))
    }
    else { ##-------------- 2-sample  (x, y) : *_two_pval_asymp() ------------------------
        yo <- c(y, yO)
        pv2X  <- P(wilcox.test(x , y , exact=TRUE, ...))$p.value
        pv2Xo <- P(wilcox.test(xo, yo, exact=TRUE, ...))$p.value
        L2. <- lapply(corrs, function(cr) wilcox.test(x , y , exact=FALSE, correct = cr, ...))
        L2o <- lapply(corrs, function(cr) wilcox.test(xo, yo, exact=FALSE, correct = cr, ...))
        list(pval    = c(vapply(L2., `[[`, 0.1, "p.value"), Xact = pv2X ),
             pvalOut = c(vapply(L2o, `[[`, 0.1, "p.value"), Xact = pv2Xo))
    }
} ## {wilcoxAsymp}
## Simulated, rounded and shifted from  t_3 and t_4 :
x20 <- c(-231, -150, -143, -101, -82,    -76, -56, -40, -29, -20,
           15,   41,   45,   61,  69,     86,  98, 144, 163, 219)
y20 <- c(-216, -146, -137, -125, -116,  -108, -35, -32, -31,   6,
           65,   92,   95,   98,  102,   128, 130, 134, 178, 190) + 0.5
## chosen to have no ties (correct=* is not used with ties):
stopifnot(anyDuplicated(rank(abs(  x20     ))) == 0,
          anyDuplicated(rank(abs(c(x20,y20)))) == 0)
roundM <- function(x, dig = 4)
    round(x, digits = max(1, dig + round( - log10(min(abs(x))))))
mkM <- function(c1, c2, m) `dimnames<-`(cbind(c1,c2, deparse.level=0L), dimnames(m))
Ax1 <- wilcoxAsymp(x20)
(mA1 <- sapply(Ax1, roundM))
trA1 <- mkM(c(0.9405, 0.9553, 0.9563, 0.9565, 0.9563, 0.9563),
            c(0.6639, 0.6766, 0.6826, 0.6834, 0.6827, 0.6827), mA1)
(dA1 <- t(t(A <- simplify2array(Ax1))[, -6] - A["Xact",]) |> signif(digits=3))
trd1 <- mkM(c(-0.0158, -0.000987, -9.29e-06, 0.000127, 1.79e-06),
            c(-0.0188, -0.0061,   -9.17e-05, 0.000658, 1.08e-05), dA1)
Ay1 <- wilcoxAsymp(y20)
sapply(Ay1, roundM)
(dAy1 <- t(t(A <- simplify2array(Ay1))[, -6] - A["Xact",]) |> signif(digits=3))
trdy1 <- mkM(c(-0.0196, -0.00566, -7.8e-05, 0.000666, 1.16e-5),
             c(-0.0187, -0.00784, -2.0e-04, 0.000638, 1.32e-5), dAy1)
Ay1P <- wilcoxAsymp(y20 + 66)
sapply(Ay1P, roundM)
(dAy1P <- t(t(A <- simplify2array(Ay1P))[, -6] - A["Xact",]) |> signif(digits=3))
trd1P <- mkM(c(.00149, .00245, 2.64e-4, 2.04e-5, 3.86e-5),
             c(.00161, .00215, 2.14e-4, 9.52e-5, 3.11e-5), dAy1P)
##
##--------------------- 2 samples -------------------------------------
Axy <- wilcoxAsymp(x20, y20)
sapply(Axy, roundM)
(dAxy <- t(t(A <- simplify2array(Axy))[, -6] - A["Xact",]) |> signif(digits=3))
trd2 <- mkM(c(-0.0132, -0.00357, -2.58e-5, 2.08e-4, 9.28e-6),
            c(-0.0123, -0.00330, -2.20e-5, 1.86e-4, 7.79e-6), dAxy)
Axy40 <- wilcoxAsymp(x20, y20 + 40)
sapply(Axy40, roundM)
(dAxy40 <- t(t(A <- simplify2array(Axy40))[, -6] - A["Xact",]) |> signif(digits=3))
trd2.40 <- mkM(c(-0.00705, -0.00236, -6.97e-5, -4.01e-5, 10.0e-6),
               c(-0.00745, -0.00265, -6.86e-5, -1.05e-5, 9.18e-6), dAxy40)
Axy2c <- wilcoxAsymp(x20, y20 + 200)
sapply(Axy2c, roundM)
(dAxy2c <- t(t(A <- simplify2array(Axy2c))[, -6] - A["Xact",]) |> signif(digits=3))
trd2.2c <- mkM(c(1.36e-5, 1.46e-5, -3.45e-6, -2.47e-6, -1.22e-7),
               c(3.83e-5, 4.16e-5, -8.54e-6, -2.70e-6, -6.56e-7), dAxy2c)
Axy2m <- wilcoxAsymp(x20, y20 + 2000)
sapply(Axy2m, roundM)
(dAxy2m <- t(t(A <- simplify2array(Axy2m))[, -6] - A["Xact",]) |> signif(digits=3))
trd2.2m <- mkM(c(6.3e-8, 6.79e-8, -1.45e-11, -1.45e-11, 7.31e-8),
               c(4.46e-7, 4.77e-7, -1.01e-08, -1.01e-08, 1.43e-7), dAxy2m)
##
stopifnot(exprs = { # on x86_64 F42 Linux, all `tolerance = *` could be 0
    all.equal(trA1,  mA1, tolerance = 1e-14)
    all.equal(trd1,  dA1, tolerance = 1e-14)
    all.equal(trdy1,dAy1, tolerance = 1e-14)
    all.equal(trd1P,dAy1P,tolerance = 1e-14)
    ## --- 2 ---
    all.equal(trd2,    dAxy,   tolerance = 1e-14)
    all.equal(trd2.40, dAxy40, tolerance = 1e-14)
    all.equal(trd2.2c, dAxy2c, tolerance = 1e-14)
    all.equal(trd2.2m, dAxy2m, tolerance = 1e-14)
})
## The 'correct = 1 | 2 | 3' did *not* improve the p values in R 4.6.0


## wilcox.test(*, digits.rank) -- changed default *AND* new digits.zap = digits.rank
x3 <- c(1.1, 2, 1.15)
wtL <- list({}
, wt.00      = wilcox.test(c(x3, 0))
, wt.e100dII = wilcox.test(c(x3,  1e-100), digits.rank=Inf)
, wte_100dII = wilcox.test(c(x3, -1e-100), digits.rank=Inf)
, wt.e100dI  = wilcox.test(c(x3,  1e-100), digits.rank=Inf, digits.zap = 12)
, wte_100dI  = wilcox.test(c(x3, -1e-100), digits.rank=Inf, digits.zap = 12)
, wt.e100d7  = wilcox.test(c(x3,  1e-100), digits.rank= 7L)
, wte_100d7  = wilcox.test(c(x3, -1e-100), digits.rank= 7L)
)
P <- if(interactive()) print else identity
(pval <- vapply(P(wtL[!sapply(wtL, is.null)]), \(wt) wt$p.value, numeric(1)))
noData <- \(x) x[names(x) != "data.name"]
stopifnot(exprs = {
    all.equal(unname(pval), c(.25, 0.125, rep(.25, 5)))
    with(wtL, all.equal(noData(wt.00),
                        noData(wt.e100dI)))
})
## the p-values were  rep((1:2)/8, 3)  in previous R, the first two indeed back compatible.
proc.time() - .pt; .pt <- proc.time()


## Bug 19029 - Overly-long dlerror() may corrupt dyn.load() state
{ try(dyn.load(strrep("A", 1000))); try(library(cluster)) -> ans }
## seg.faulted typically  (when 'cluster' was found)
if(!inherits(ans, "try-error")) detach("package:cluster", unload = TRUE)


## Bug 19086 -- Compiler optimization related  -- nlminb() convergence when bounds are active
f <- function(x) sum( log(diff(x)^2+.01) + (x[1]-1)^2 )
p.s <- c(5:10,2*(6:11)); names(p.s) <- paste0("p=", p.s)
optL <- lapply(p.s, function(p) nlminb(rep(0, p), f, lower=-1, upper=3))
unique(cbind(msgs <- sapply(optL, `[[`, "message")))
## indeed still in Fedora 42; R-4.6.0 self-compiled
## in good case:
stopifnot(grepl("^relative convergence ", msgs))
sapply(optL, `[[`, "iterations") # platform dep.
## p=5  p=6  p=7  p=8  p=9 p=10 p=11 p=12       p=22
##  28   47   47   55   51   65   77   80  ....  148
sapply(optL, `[[`, "evaluations") # probably platform dep.
## Test estimated par and objective function:
head(obj <- sapply(optL, `[[`, "objective"))
str(parL <- lapply(optL, `[[`, "par"))
truepL <- lapply(p.s, function(p) rep.int(1, p)) # true par. = (1 1 .. 1)
writeLines(all.equal(parL, truepL, tolerance = 0))
stopifnot(exprs = {
    abs((obj / (p.s - 1)) - log(0.01)) < 1e-9
    all.equal(parL, truepL, tolerance = 4e-5) # p=20, 1.5656e-5 (Windows - arm)
})
## for p >= 9 did not converge previously (in R <= 4.6.0)

## Bug 18930 -- Merge with zero rows df and single column df
a <- data.frame(x=numeric())
b <- data.frame(y=1:2)

ab <- merge(a, b, all.x = TRUE, all.y = TRUE)
stopifnot(identical(names(ab), c(names(a), names(b))))
## previously merge dropped column names (in R <= 4.6.0)

k <- data.frame(x=numeric(), y=numeric())
m <-  data.frame(z=1:2)

km <- merge(k, m, all.x = TRUE, all.y = TRUE)
stopifnot(identical(names(km), c(names(k), names(m))))
## previously `y[FALSE, ]` instead of `z` (in R <= 4.6.0)


## read.dcf() and write.dcf() always use UTF-8 (r-dev-day issue 156)
local({
    eacute <- intToUtf8(0xe9) # small e with acute, UTF-8
    ccedil <- intToUtf8(0xe7) # small c with cedilla, UTF-8
    ## The shared base:::.enc2utf8_sub() helper used by read/write.dcf():
    ## convert to UTF-8 honouring the declared encoding, escape invalid
    ## bytes, and pass non-character input through unchanged.
    lat <- "Fran\xe7ois"; Encoding(lat) <- "latin1"
    ## A string declared UTF-8 but containing a stray invalid byte: must be
    ## escaped regardless of the native encoding (an undeclared literal would
    ## be reinterpreted via the locale codepage on non-UTF-8 platforms).
    inv <- "a\xffb"; Encoding(inv) <- "UTF-8"
    stopifnot(
        identical(.enc2utf8_sub("abc"), "abc"),
        .enc2utf8_sub(lat) == paste0("Fran", ccedil, "ois"),
        Encoding(.enc2utf8_sub(lat)) == "UTF-8",
        .enc2utf8_sub(inv) == "a<ff>b",
        identical(.enc2utf8_sub(c("a", NA)), c("a", NA)),
        identical(.enc2utf8_sub(1:3), 1:3)
    )
    ## A DCF file with a valid UTF-8 field and a field with an invalid byte.
    tf <- tempfile()
    con <- file(tf, "wb")
    writeBin(charToRaw("Package: testpkg\nTitle: caf\xc3\xa9\nAuthor: Fran\xffois\n"),
             con)
    close(con)
    ## Both the C path (all = FALSE) and the R path (all = TRUE) must agree:
    ## valid UTF-8 is marked as such, invalid bytes are escaped as <xx>.
    dC <- read.dcf(tf)
    dR <- read.dcf(tf, all = TRUE)
    stopifnot(
        dC[1, "Title"] == paste0("caf", eacute),
        Encoding(dC[1, "Title"]) == "UTF-8",
        dC[1, "Author"] == "Fran<ff>ois",
        identical(unname(dC[1, "Title"]),  dR$Title),
        identical(unname(dC[1, "Author"]), dR$Author)
    )
    ## write.dcf() converts a declared encoding to UTF-8 and escapes any
    ## invalid bytes; the output must be valid UTF-8.
    x <- data.frame(Package = "testpkg",
                    Author  = "Fran\xe7ois",
                    Note    = "bad\xffbyte",
                    stringsAsFactors = FALSE)
    Encoding(x$Author) <- "latin1"
    Encoding(x$Note)   <- "UTF-8"   # stray invalid byte, must be escaped
    tf2 <- tempfile()
    write.dcf(x, tf2)            # always UTF-8, regardless of locale
    stopifnot(validUTF8(rawToChar(readBin(tf2, "raw", file.size(tf2)))))
    y <- read.dcf(tf2)
    stopifnot(
        y[1, "Author"] == paste0("Fran", ccedil, "ois"),
        Encoding(y[1, "Author"]) == "UTF-8",
        y[1, "Note"] == "bad<ff>byte"
    )
    ## An invalid byte on a continuation line is escaped, while a valid
    ## UTF-8 character on the same field is preserved.
    tf3 <- tempfile()
    con <- file(tf3, "wb")
    writeBin(charToRaw("Package: p\nDescription: one \xff bad\n  caf\xc3\xa9 line\n"),
             con)
    close(con)
    d3C <- read.dcf(tf3)
    d3R <- read.dcf(tf3, all = TRUE)
    stopifnot(
        grepl("<ff>", d3C[1, "Description"], fixed = TRUE),
        grepl(eacute, d3C[1, "Description"], fixed = TRUE),
        Encoding(d3C[1, "Description"]) == "UTF-8",
        identical(unname(d3C[1, "Description"]), d3R$Description)
    )
    ## Valid 3- and 4-byte characters are preserved; the various kinds of
    ## invalid sequence (truncated, overlong, surrogate) are each escaped
    ## per byte, and a literal "<ff>" is not re-escaped.  C and R agree.
    euro  <- intToUtf8(0x20AC)   # 3-byte UTF-8
    emoji <- intToUtf8(0x1F600)  # 4-byte UTF-8
    rdb <- function(bytes) {
        f <- tempfile(); cc <- file(f, "wb"); writeBin(as.raw(bytes), cc); close(cc)
        on.exit(unlink(f))
        list(C = read.dcf(f)[1, "X"], R = read.dcf(f, all = TRUE)$X)
    }
    cases <- list(
        list(b = c(charToRaw("Package: p\nX: "), charToRaw(euro),
                   charToRaw(emoji), charToRaw("\n")),    want = paste0(euro, emoji)),
        list(b = c(charToRaw("Package: p\nX: a"), as.raw(0xc3),
                   charToRaw("\n")),                       want = "a<c3>"),
        list(b = c(charToRaw("Package: p\nX: "), as.raw(c(0xc0, 0x80)),
                   charToRaw("\n")),                       want = "<c0><80>"),
        list(b = c(charToRaw("Package: p\nX: "), as.raw(c(0xed, 0xa0, 0x80)),
                   charToRaw("\n")),                       want = "<ed><a0><80>"),
        list(b = charToRaw("Package: p\nX: a<ff>b\n"),     want = "a<ff>b")
    )
    for (cs in cases) {
        got <- rdb(cs$b)
        stopifnot(got$C == cs$want, identical(unname(got$C), got$R))
    }
    ## An invalid byte in a field name (tag) is escaped; C and R agree.
    tf4 <- tempfile()
    con <- file(tf4, "wb")
    writeBin(c(charToRaw("Package: p\nX"), as.raw(0xff), charToRaw("Y: v\n")), con)
    close(con)
    stopifnot("X<ff>Y" %in% colnames(read.dcf(tf4)),
              identical(colnames(read.dcf(tf4)), names(read.dcf(tf4, all = TRUE))))
    ## A repeated field with an invalid byte: all = TRUE gives a list column.
    con <- file(tf4, "wb")
    writeBin(c(charToRaw("Package: p\nX: a\nX: "), as.raw(0xff), charToRaw("\n")), con)
    close(con)
    stopifnot(identical(unlist(read.dcf(tf4, all = TRUE)$X), c("a", "<ff>")))
    ## A keep.white field uses the non-folding branch of write.dcf();
    ## a latin1 value is still written as valid UTF-8.
    v <- "Fran\xe7ois"; Encoding(v) <- "latin1"
    write.dcf(data.frame(Package = "p", Maintainer = v, stringsAsFactors = FALSE),
              tf4, keep.white = "Maintainer")
    stopifnot(validUTF8(rawToChar(readBin(tf4, "raw", file.size(tf4)))),
              read.dcf(tf4)[1, "Maintainer"] == paste0("Fran", ccedil, "ois"))
    unlink(c(tf, tf2, tf3, tf4))
})
## read.dcf() previously returned values with encoding "unknown", and
## write.dcf() relied on the Encoding field (in R <= 4.6.0)


## seq.int(along.with = *) for non-vector objects (PR#19100)
stopifnot(identical(seq.int(along.with = NULL), integer(0)),
          identical(seq.int(along.with = mean), 1L))


## .OBJSXP() and deparse(<bare OBJSXP>), e.g. of S7 objects,  RConsortium/S7#524 :
exexpr <- quote(structure(.OBJSXP(), class = "S7_object", foo = 1:2))
obj <- eval(exexpr)
stopifnot(exprs = {
    typeof(obj) == "object"
    !isS4(obj)
    identical(.OBJSXP(), asS3(getClass("S4")@prototype, complete = FALSE))
    identical(attributes(obj), list(class = "S7_object", foo = 1:2))
    identical(eval(parse(text = deparse(obj))[[1]]), obj)
    identical(deparse(obj), format(exexpr))
})
## .OBJSXP() is new; in R <= 4.x, these deparse()d to the non-parseable "<object>".


# Almost perfect fit in summary.aov() -- same warning as in summary.lm() - PR#18341
chkFM <- function(mA, mL) {
    print(smA <- getVaW(summary(mA)))
    print(smL <- getVaW(summary(mL)))
    stopifnot(exprs = {
        identical(coef(mA), coef(mL))
        !is.null(wA <- attr(smA, "warning"))
        !is.null(wL <- attr(smL, "warning"))
        !englishMsgs || grepl("essentially perfect fit", wA)
        !englishMsgs || grepl("essentially perfect fit", wL)
    })
}
## simple case:
d30 <- data.frame(x = gl(2, 15), y = 1)
fmL <- lm (y~x, data=d30)
fmA <- aov(y~x, data=d30)
chkFM(fmA, fmL)
## ex. with 2 y's :
d30 <- data.frame(group = gl(2, 15), weight = 1, height = 1)
fmL <- lm (cbind(weight, height) ~ group, data = d30)
fmA <- aov(cbind(weight, height) ~ group, data = d30)
chkFM(fmA, fmL)
## the *A models from aov() / summary.aov()  did not raise the warning in R <= 4.6.z
##
## A case where length(fitted) == 1 gave var(fitted) |-> NA
ladyB <- data.frame(
    ID = factor(1:16), Run = gl(2, 8),
    DPlant = factor(rep((1:8)*10, 2)),
    Host = factor(rep(rep(2:1, each=4), 2), labels = c("bean", "trefoil")),
    Ladybird = factor(rep(rep(2:1, each=2), 4), labels = c("-", "+")),
    Cadaver = rep(c(5, 10), 8),
    Live     = c(15, 12, 20, 20, 18, 17, 20, 20, 18, 17, 20, 20, 15, 19, 20, 20),
    Infected = c(1, 2, 1, 2, 5, 10, 1, 3, 2, 2, 0, 0, 5, 8, 1, 7))
fm <- aov(log(P/(100 - P)) ~ Host * Cadaver * Ladybird + Error(Run/DPlant),
          data = transform(ladyB, P = 100 * (Infected + 1)/(Live + 2), Cadaver = factor(Cadaver)))
summary(fm)
## a few days ==>  Error in  if (is.finite(resvar) && resvar < (mean(fitted)^2 + var(c(fitted))) * :
##                                                    missing value where TRUE/FALSE needed


## PR#19110 -- missing protect in SubassignTypeFix invocation
setClass("A", representation(x = "numeric"))
as.vector.A <- function(x, mode = "any") x@x + 1
##
f <- function(on) {
    v <- TRUE ; v[1] <- new("A", x = 99) # S4 dispatch _before_ torture (<==> speed)
    v <- TRUE
    gctorture(on)
    v[1] <- new("A", x = 99)
    gctorture(FALSE)
    v
}
stopifnot(identical(f(FALSE), 100),
          identical(f(TRUE),  100)) # was '1' (silently)


## PR#19109 -- `dim<-` dimension vector product can overflow
x <- integer()
er <- tryCid(dim(x) <- rep(2^16, 4))
stopifnot(inherits(er, "error"))
if(englishMsgs)
    stopifnot(grepl("too many", conditionMessage(er)))
## gave no error but an x of length zero; x[] <- .. would seg.fault
t30 <- 2^30
for(nd in c(2:4, 33:37)) {
    d. <- c(rep(t30, nd), 0)
    x <- integer();   dim(x) <- d.
    y <- array(integer(), dim = d.)
    stopifnot(identical(x, y), is.integer(d <- dim(x)), all.equal(d., d))
}
## above creation of x & y failed for a couple of hours in R-devel


## PR#19116 -- <matrix>[[i, j]]: stochastic error with negative i
m <- matrix(1:4, 2); mm <- m; mm[[-1, 1]] <- 99L; mm[, 1] # 1 99
RR <- replicate(1000, {
    invisible(lapply(1:200, function(i) c(2L, 2L)))   # churn the heap
    as.character(m[[-1L, 1L]])
})
stopifnot(RR == "2", length(RR) == 1000L)
## RR was '2' "randomly" in R <= 4.6.1


## PR#19049
save("save", file=(tf <- tempfile("saveRdata")))
sys.load.image(tf, FALSE); rm(tf, save)
## had called .Internal(RNGkind(..)) with wrong number of args

## aperm and 
m <- matrix(1:10, 2, 5, dimnames = list(X = paste0("x", 1:2), Y = paste0("y", 1:5)))
a <- array(m, dim = c(2, 5, 1), dimnames = list(X = paste0("x", 1:2), Y = paste0("y", 1:5), Z = "z1"))

stopifnot(
    identical(aperm(m, c(2, 1)), t(m)),
    identical(aperm(m), t(m)),
    identical(drop(aperm(a, c(2, 1, 3))), aperm(m, c(2, 1))),
    identical(drop(aperm(a, c(2, 1, 3), resize = FALSE)), aperm(m, c(2, 1), resize = FALSE)),
    identical(drop(aperm(a, c("Y", "X", "Z"))), aperm(m, c("Y", "X"))),
    identical(drop(aperm(a, c(1, 2, 3), resize = FALSE)), aperm(m, c(1, 2), resize = FALSE))
)

## keep at end
rbind(last =  proc.time() - .pt,
      total = proc.time())
