biomod2-package | Species Distribution Modeling within an Ensemble Forecasting framework |
biomod2 | Species Distribution Modeling within an Ensemble Forecasting framework |
BIOMOD_FormatingData | Initialise the datasets for usage in 'biomod2' |
BIOMOD_ModelingOptions | Configure the modeling options for each selected model |
BIOMOD_Modeling | Run a range of species distribution models |
BIOMOD_EnsembleModeling | Create and evaluate an ensemble set of models and predictions |
BIOMOD_Projection | Project the calibrated models within 'biomod2' into new space or time |
BIOMOD_EnsembleForecasting | Ensemble projections of species over space and time |
BIOMOD_ConvertOldRun | Convert objects and outputs from BIOMOD.xx into biomod2.xx objects and outputs |
BIOMOD_LoadModels | Load models built within BIOMOD_Modeling function |
BIOMOD_RangeSize | Analysis of the range size changes |
BIOMOD_RangeSize-method | Analysis of the range size changes |
BIOMOD_RangeSize-methods | Analysis of the range size changes |
sre | Surface Range Envelope |
Print_Default_ModelingOptions | Get default values of BIOMOD inner models' options |
level.plot | Plot 2-dimensional data for visualizing distribution of species or environment |
multiple.plot | Plot and compare prediction maps within BIOMOD |
response.plot2 | Analysis of the 2D or 3D response curves of a model within biomod2 |
BinaryTransformation | Convert species' probability of occurrence into binary presence-absence data using a predefined threshold |
BinaryTransformation-method | Convert species' probability of occurrence into binary presence-absence data using a predefined threshold |
BinaryTransformation-methods | Convert species' probability of occurrence into binary presence-absence data using a predefined threshold |
FilteringTransformation | Convert species' probability of occurrence into binary presence-absence data using a predefined threshold |
FilteringTransformation-method | Convert species' probability of occurrence into binary presence-absence data using a predefined threshold |
FilteringTransformation-methods | Convert species' probability of occurrence into binary presence-absence data using a predefined threshold |
makeFormula | Standardized formula maker |
CustomIndexMaker | Replace default package Index help file by a custom one. |
Find.Optim.Stat | Find the threshold driving to the best evaluation score |
calculate.stat | Calculate evaluation metrics based on a misclassification table |
getStatOptimValue | get the optimal score of evaluation statistical metrics |
SampleMat2 | Sample binary vector |
DF_to_ARRAY | Convert a biomod2 data.frame into array |
RemoveProperly | remove properly BIOMOD_Modeling outputs |
RemoveProperly-method | remove properly BIOMOD_Modeling outputs |
free | BIOMOD.projection.out setter |
free-method | BIOMOD.projection.out setter |
getEMalgos | BIOMOD.EnsembleModeling.out getters |
getEMalgos-method | BIOMOD.EnsembleModeling.out getters |
getEMbuiltModels | BIOMOD.EnsembleModeling.out getters |
getEMbuiltModels-method | BIOMOD.EnsembleModeling.out getters |
getEMeval | BIOMOD.EnsembleModeling.out getters |
getEMeval-method | BIOMOD.EnsembleModeling.out getters |
getEMkeptModels | BIOMOD.EnsembleModeling.out getters |
getEMkeptModels-method | BIOMOD.EnsembleModeling.out getters |
getFormalModel | biomod2 models objects class and functions |
getFormalModel-method | biomod2 models objects class and functions |
getModelsBuiltModels | BIOMOD.models.out getters |
getModelsBuiltModels-method | BIOMOD.models.out getters |
getModelsEvaluations | BIOMOD.models.out getters |
getModelsEvaluations-method | BIOMOD.models.out getters |
getModelsInputData | BIOMOD.models.out getters |
getModelsInputData-method | BIOMOD.models.out getters |
getModelsOptions | BIOMOD.models.out getters |
getModelsOptions-method | BIOMOD.models.out getters |
getModelsPrediction | BIOMOD.models.out getters |
getModelsPrediction-method | BIOMOD.models.out getters |
getModelsPredictionEval | BIOMOD.models.out getters |
getModelsPredictionEval-method | BIOMOD.models.out getters |
getModelsVarImport | BIOMOD.models.out getters |
getModelsVarImport-method | BIOMOD.models.out getters |
getProjection | BIOMOD.projection.out getters |
getProjection-method | BIOMOD.projection.out getters |
getScalingModel | biomod2 models objects class and functions |
getScalingModel-method | biomod2 models objects class and functions |
BIOMOD.formated.data | BIOMOD_FormatingData() outputs objects class |
BIOMOD.formated.data-class | BIOMOD_FormatingData() outputs objects class |
BIOMOD.formated.data-method | BIOMOD_FormatingData() outputs objects class |
BIOMOD.formated.data.PA | BIOMOD_FormatingData() outputs objects class |
BIOMOD.formated.data.PA-class | BIOMOD_FormatingData() outputs objects class |
BIOMOD.Model.Options-class | BIOMOD_() outputs objects class |
BIOMOD.models.out-class | BIOMOD_modelling() outputs objects class |
biomod2_model | biomod2 models objects class and functions |
biomod2_model-class | biomod2 models objects class and functions |
BIOMOD.EnsembleModeling.out | BIOMOD_EnsembleModeling() outputs objects class |
BIOMOD.EnsembleModeling.out-class | BIOMOD_EnsembleModeling() outputs objects class |
BIOMOD.projection.out | BIOMOD_Projection() outputs objects class |
BIOMOD.projection.out-class | BIOMOD_Projection() outputs objects class |
plot-method | BIOMOD_FormatingData() outputs objects class |
plot-method | BIOMOD_Projection() outputs objects class |
show,BIOMOD.Model.Options | BIOMOD_ModelingOptions() outputs objects class |
show-method | BIOMOD_EnsembleModeling() outputs objects class |
show-method | BIOMOD_FormatingData() outputs objects class |
show-method | BIOMOD_modelling() outputs objects class |
show-method | BIOMOD_Projection() outputs objects class |
ANN_biomod2_model | biomod2 models objects class and functions |
ANN_biomod2_model-class | biomod2 models objects class and functions |
CTA_biomod2_model | biomod2 models objects class and functions |
CTA_biomod2_model-class | biomod2 models objects class and functions |
FDA_biomod2_model | biomod2 models objects class and functions |
FDA_biomod2_model-class | biomod2 models objects class and functions |
GAM_biomod2_model | biomod2 models objects class and functions |
GAM_biomod2_model-class | biomod2 models objects class and functions |
GBM_biomod2_model | biomod2 models objects class and functions |
GBM_biomod2_model-class | biomod2 models objects class and functions |
GLM_biomod2_model | biomod2 models objects class and functions |
GLM_biomod2_model-class | biomod2 models objects class and functions |
MARS_biomod2_model | biomod2 models objects class and functions |
MARS_biomod2_model-class | biomod2 models objects class and functions |
MAXENT_biomod2_model | biomod2 models objects class and functions |
MAXENT_biomod2_model-class | biomod2 models objects class and functions |
RF_biomod2_model | biomod2 models objects class and functions |
RF_biomod2_model-class | biomod2 models objects class and functions |
SRE_biomod2_model | biomod2 models objects class and functions |
SRE_biomod2_model-class | biomod2 models objects class and functions |
predict-method | biomod2 models objects class and functions |
show-method | biomod2 models objects class and functions |
BIOMOD.stored.array | BIOMOD.stored.xxx objects class |
BIOMOD.stored.array-class | BIOMOD.stored.xxx objects class |
BIOMOD.stored.data | BIOMOD.stored.xxx objects class |
BIOMOD.stored.data-class | BIOMOD.stored.xxx objects class |
BIOMOD.stored.files | BIOMOD.stored.xxx objects class |
BIOMOD.stored.files-class | BIOMOD.stored.xxx objects class |
BIOMOD.stored.formated.data | BIOMOD.stored.xxx objects class |
BIOMOD.stored.formated.data-class | BIOMOD.stored.xxx objects class |
BIOMOD.stored.models.options | BIOMOD.stored.xxx objects class |
BIOMOD.stored.models.options-class | BIOMOD.stored.xxx objects class |
BIOMOD.stored.models.out | BIOMOD.stored.xxx objects class |
BIOMOD.stored.models.out-class | BIOMOD.stored.xxx objects class |
BIOMOD.stored.raster.stack | BIOMOD.stored.xxx objects class |
BIOMOD.stored.raster.stack-class | BIOMOD.stored.xxx objects class |
disk.pseudo.abs.selection | biomod2 internal functions |
disk.pseudo.abs.selection-method | biomod2 internal functions |
random.pseudo.abs.selection | biomod2 internal functions |
random.pseudo.abs.selection-method | biomod2 internal functions |
sre.pseudo.abs.selection | biomod2 internal functions |
sre.pseudo.abs.selection-method | biomod2 internal functions |
user.defined.pseudo.abs.selection | biomod2 internal functions |
user.defined.pseudo.abs.selection-method | biomod2 internal functions |
Projection | biomod2 internal functions |
Projection-method | biomod2 internal functions |
.Models.prepare.data | biomod2 internal functions |
.Models.prepare.data-method | biomod2 internal functions |
.Projection.do.proj | biomod2 internal functions |
.Projection.do.proj-method | biomod2 internal functions |
.transform.outputs | biomod2 internal functions |
.transform.outputs-method | biomod2 internal functions |