GWAF-package {GWAF} | R Documentation |
GWAF
package provides functions to fit Linear Mixed Effects (LME) model accounting for within pedigree correlation
for testing genetic association between genotyped/imputed SNPs and a continuous trait and functions to
fit Generalized Estimation Equation (GEE) model using each pedigree as a cluster with independent working correlation matrix
for testing genetic association between SNPs and a dichotomous trait. In addition, GWAF
package
also provides functions for making genome-wide p-values plot and QQ plot containing genomic control
parameter estimate and generating scripts for genome-wide association analysis.
Package: | GWAF |
Type: | Package |
Version: | 1.2 |
Date: | 2009-11-25 |
License: | GPL (>= 2) |
Qiong Yang <qyang@bu.edu> and Ming-Huei Chen <mhchen@bu.edu>
Maintainer: Ming-Huei Chen <mhchen@bu.edu>