Functional Shannon Entropy for Virome Mutational Analysis
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Documentation for package ‘MetaEntropy’ version 1.4
Help Pages
| as.data.frame.entropyProfile | Coerce 'entropyProfile' to a Data Frame |
| assessHotSpot | Evaluates Entropy Hotspot |
| createPositionSummary | Summarize variants and frequencies at a genome position |
| createStorage | Build a structure representing amino acid categories. |
| entropyProfile | Create (empty) object of class "entropyProfile" |
| fillPosition | Translate amino acid frequencies into category frequencies |
| getEntropySignature | Infer Entropy Signature |
| getPosEntropy | Calculates aminoacidic entropy resulting from SNVs present in a specific locus |
| heatmap_entropyProfiles | Graphically compare entropy profiles |
| intraHostVariants | SNVs from multiple organs of individuals with postmortem SARS-CoV-2 detection |
| mn908947.3 | CDS topology and length of Wuhan-Hu-1 reference strain |
| plot.entropyProfile | Plot entropy signatures |
| print.profileSummary | Print method for 'profileSummary' objects |
| print.tidyMutations | Print method for 'tidyMutations' objects |
| showMutations | Summarize mutations |
| summary.entropyProfile | Summarize entropy profile |
| wWater | Data from first and third COVID-19 waves in Trelew <http://tools.wmflabs.org/geohack/geohack.php?language=es&pagename=Trelew¶ms=-43.253333333333_N_-65.309444444444_E_type:city> |