'ggplot2' Plots for the 'vegan' Package

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Documentation for package ‘ggvegan’ version 0.2.1

• DESCRIPTION file
• Package NEWS
• Package README

Help Pages

add_biplot_arrows	Adds a biplot arrow layer to an existing plot
add_biplot_centroids	Adds a biplot arrow layer to an existing plot
add_spp_site_scores	Adds species and site score layers to an existing plot
arrow_mul	Scale Vectors to Data
autoplot.anosim	ggplot-based plot for objects of class '"anosim"'
autoplot.cca	ggplot-based plot for objects of class '"cca"'
autoplot.dbrda	ggplot-based plot for objects of class '"dbrda"'
autoplot.decorana	ggplot-based plot for objects of class '"decorana"'
autoplot.envfit	ggplot-based plot for 'envfit' objects
autoplot.fisherfit	Plot Fisher's log-series
autoplot.isomap	ggplot-based plot for objects of class '"isomap"'
autoplot.metaMDS	ggplot-based plot for objects of class '"metaMDS"'
autoplot.permustats	Autoplot Graphics for vegan permustats Objects
autoplot.poolaccum	ggplot-based plot for objects of class '"poolaccum"'
autoplot.prc	ggplot-based plot for objects of class '"prc"'
autoplot.prestonfit	Plot Preston's log-normal model of species abundance
autoplot.rda	ggplot-based plot for objects of class "rda"
autoplot.vegan_pco	ggplot-based plot for objects of class '"vegan_pco"'
check_user_layers	Check user-supplied layers against list of valid layers
fortify.anosim	Fortify analysis of similarities (ANOSIM) results
fortify.cca	Fortify a '"cca"' object.
fortify.dbrda	Fortify a '"dbrda"' object.
fortify.decorana	Fortify a '"decorana"' object.
fortify.envfit	Fortify method for 'envfit' objects
fortify.fisherfit	Tidied species rank abundance data and estimated Fisher's log-series
fortify.isomap	Fortify isometric feature mapping results
fortify.metaMDS	Fortify a '"mataMDS"' object.
fortify.permustats	Fortify permutation statistics
fortify.poolaccum	Fortify extrapolated species richness of a species pool
fortify.prc	Fortify a '"prc"' object
fortify.prestonfit	Tidied species octave abundance data
fortify.rda	Fortify a '"rda"' object.
fortify.renyiaccum	Fortify Rényi accumulation curves
fortify.vegan_pco	Fortify a '"vegan_pco"' object.
geom_ordi_arrow	Add a biplot arrow layer to an ordiggplot
geom_ordi_axis	Crosshair for axes in eigenvector methods
geom_ordi_label	Add a label layer to an ordiggplot
geom_ordi_point	Add a point layer to an ordiggplot
geom_ordi_text	Add a text layer to an ordiggplot
get_dimension_names	Extract the names of the dimensions to plot as a character vector
ggscores	Create a ggplot Object
label_fun	Adds a label layer using one of a set of common geoms
layer_draw_list	List of layers to draw for a given vegan object
ordiggplot	Create a ggplot Object
scores_length	Number of scores
StatVectorfit	Add Fitted Vectors to Ordination plots
stat_vectorfit	Add Fitted Vectors to Ordination plots
tidy.anosim	Fortify analysis of similarities (ANOSIM) results
tidy.cca	Fortify a '"cca"' object.
tidy.dbrda	Fortify a '"dbrda"' object.
tidy.decorana	Fortify a '"decorana"' object.
tidy.envfit	Fortify method for 'envfit' objects
tidy.fisherfit	Tidied species rank abundance data and estimated Fisher's log-series
tidy.isomap	Fortify isometric feature mapping results
tidy.metaMDS	Fortify a '"mataMDS"' object.
tidy.permustats	Fortify permutation statistics
tidy.poolaccum	Fortify extrapolated species richness of a species pool
tidy.prc	Fortify a '"prc"' object
tidy.prestonfit	Tidied species octave abundance data
tidy.rda	Fortify a '"rda"' object.
tidy.renyiaccum	Fortify Rényi accumulation curves
tidy.vegan_pco	Fortify a '"vegan_pco"' object.
valid_layers	Valid layers for vegan objects
valid_layers.cca	Valid layers for vegan objects
valid_layers.dbrda	Valid layers for vegan objects
valid_layers.rda	Valid layers for vegan objects