Geostatistical Modeling of Spatially Referenced Data

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Documentation for package ‘RiskMap’ version 1.0.0

• DESCRIPTION file.

Help Pages

abund_sma	Female Culex pipiens abundance (collections) in the Sacramento Metropolitan Area
anopheles	Anopheles mosquitoes in Southern Cameroon
assess_pp	Assess Predictive Performance via Spatial Cross-Validation
assess_sim	Assess Simulations
check_mcmc	Check MCMC Convergence for Spatial Random Effects
coef.RiskMap	Extract Parameter Estimates from a "RiskMap" Model Fit
compute_ID_coords	Compute Unique Coordinate Identifiers
convex_hull_sf	Convex Hull of an sf Object
create_grid	Create Grid of Points Within Shapefile
dast	Fitting of decay-adjusted spatio-temporal (DAST) model
dist_summaries	Summaries of the distances
galicia	Heavy metal biomonitoring in Galicia
glgpm	Estimation of Generalized Linear Gaussian Process Models
glgpm_sim	Simulation from Generalized Linear Gaussian Process Models
gp	Gaussian Process Model Specification
infect_sma	West Nile virus pool tests for female *Culex pipiens* in the Sacramento Metropolitan Area
italy_sim	Simulated data-set on the Italian peninsula
Laplace_sampling_MCMC	Laplace-sampling MCMC for Generalized Linear Gaussian Process Models
liberia	River-blindness in Liberia
loaloa	Loa loa prevalence data from 197 village surveys
malkenya	Malaria Transmission in the Western Kenyan Highlands
malnutrition	Malnutrition in Ghana
matern.grad.phi	First Derivative with Respect to phi
matern.hessian.phi	Second Derivative with Respect to phi
matern_cor	Matern Correlation Function
maxim.integrand	Maximization of the Integrand for Generalized Linear Gaussian Process Models
plot.RiskMap_pred_target_grid	Plot Method for RiskMap_pred_target_grid Objects
plot.RiskMap_pred_target_shp	Plot Method for RiskMap_pred_target_shp Objects
plot_AnPIT	Plot Calibration Curves (AnPIT / PIT) from Spatial Cross-Validation
plot_mda	Plot the estimated MDA impact function
plot_score	Plot Spatial Scores for a Specific Model and Metric
plot_sim_surf	Plot simulated surface data for a given simulation
plot_s_variogram	Plotting the empirical variogram
pred_over_grid	Prediction of the random effects components and covariates effects over a spatial grid using a fitted generalized linear Gaussian process model
pred_target_grid	Predictive Target Over a Regular Spatial Grid
pred_target_shp	Predictive Targets over a Shapefile (grid-aggregated)
print.summary.RiskMap	Print Summary of RiskMap Model
print.summary.RiskMap.sim.res	Print Simulation Results
print.summary.RiskMap.spatial.cv	Print Summary of RiskMap Spatial Cross-Validation Scores
propose_utm	EPSG of the UTM Zone
re	Random Effect Model Specification
set_control_sim	Set Control Parameters for Simulation
summary.RiskMap	Summarize Model Fits
summary.RiskMap.sim.res	Summarize Simulation Results
summary.RiskMap.spatial.cv	Summarize Cross-Validation Scores for Spatial RiskMap Models
surf_sim	Simulate surface data based on a spatial model
s_variogram	Empirical variogram
to_table	Generate LaTeX Tables from RiskMap Model Fits and Validation
tz_covariates	Covariates Dataset for Malaria Prediction in Tanzania
tz_malaria	Malaria Dataset from Tanzania Demographic Health Surveys 2015
update_predictors	Update Predictors for a RiskMap Prediction Object