ACTG175                 ACTG175, block randomized study from
                        speff2trial package
CPH_HPN_CRBSI           Rates for HPN program for patients of
                        Copenhagen Cohort
ClaytonOakes            Clayton-Oakes model with piece-wise constant
                        hazards
Dbvn                    Derivatives of the bivariate normal cumulative
                        distribution function
Event                   Event history object
Grandom_cif             Additive Random effects model for competing
                        risks data for polygenetic modelling
IC.binreg               Influence curve components for binomial
                        regression ATE
IC.phreg                Influence Functions for phreg objects
LinSpline               Simple linear spline
TRACE                   The TRACE study group of myocardial infarction
WA_recurrent            While-Alive Estimands for Recurrent Events
WA_reg                  While-Alive Regression for Recurrent Events
aalenMets               Fast Additive Hazards Model with Robust
                        Standard Errors
bicomprisk              Estimation of Concordance in Bivariate
                        Competing Risks Data
binomial_twostage       Fits Clayton-Oakes or bivariate Plackett (OR)
                        models for binary data using marginals that are
                        on logistic form. If clusters contain more than
                        two times, the algoritm uses a compososite
                        likelihood based on all pairwise bivariate
                        models.
binreg                  Binomial Regression for Censored Competing
                        Risks Data
binregATE               Average Treatment Effect for Censored Competing
                        Risks Data using Binomial Regression
binregCasewise          Estimate Casewise Concordance Using Binomial
                        Regression
binregG                 G-Estimator for Binomial Regression Model
                        (Standardized Estimates)
binregRatio             Percentage of Years Lost Due to a Cause
                        Regression
binregStrata            Stratified Binomial Regression with
                        cross-validation option
binregTSR               Two-Stage Randomization for Survival or
                        Competing Risks Data
binreg_IPTW             IPTW logistic regression, Inverse Probabibilty
                        of Treatment Weighted binreg
biprobit                Bivariate Probit model
blocksample             Block sampling
bmt                     The Bone Marrow Transplant Data
bptwin                  Liability model for twin data
brier_binreg            Cross-validated Brier score for competing
                        risks, RMST and RMTL regression using
                        stratified leave-fold-out fits ('binregStrata')
calgb8923               CALGB 8923, twostage randomization SMART design
casewise                Estimate Casewise Concordance from prodlim
                        Objects
casewise_bin            Casewise Concordance from Concordant/Discordant
                        Counts
cif                     Cumulative Incidence with Robust Standard
                        Errors
cif_yearslost           Restricted Mean Time Lost for Competing Risks
cifreg                  Cumulative Incidence Function (CIF) Regression
cifregFG                Fine-Gray Cumulative Incidence Function
                        Regression
cluster_index           Finds subjects related to same cluster
coarse_clust            Coarsen Cluster Identifiers
concordanceCor          Concordance Computes concordance and casewise
                        concordance
cor_cif                 Cross-odds-ratio, OR or RR risk regression for
                        competing risks
count_history           Compute cumulative event counts as
                        time-dependent covariates
cumoddsreg              Cumulative Odds Regression for Discrete Time
                        Data
daggregate              aggregating for for data frames
dby                     Calculate summary statistics grouped by
dcor                    summary, tables, and correlations for data
                        frames
dcut                    Cutting, sorting, rm (removing), rename for
                        data frames
dermalridges            Dermal ridges data (families)
dermalridgesMZ          Dermal ridges data (monozygotic twins)
diabetes                The Diabetic Retinopathy Data
divide_conquer          Split a data set and run function
dlag                    Lag operator
dprint                  list, head, print, tail
dreg                    Regression for data frames with dutility call
drelevel                relev levels for data frames
drop.specials           Remove Special Terms from a Formula
dsort                   Sort data frame
dspline                 Simple linear spline
dtable                  tables for data frames
dtransform              Transform that allows condition
estimate.binregCV       Joint estimate across CV models for a binregCV
                        object
event_split             event_split (SurvSplit).
event_split2            Event split with two time-scales, time and
                        gaptime
eventpois               Extract survival estimates from lifetable
                        analysis
extendCums              Extend Cumulative Hazard Functions to Common
                        Time Range
familyclusterWithProbands_index
                        Finds all pairs within a cluster (famly) with
                        the proband (case/control)
familycluster_index     Finds all pairs within a cluster (family)
fast.approx             Fast approximation
fast.cluster            Fast Cluster Index Conversion
fast.pattern            Fast pattern
fast.reshape            Fast reshape
faster.reshape          Fast Reshape from Long to Wide Format
folds                   Generate Random Fold Indices for
                        Cross-Validation
force.same.cens         Force Same Censoring Within Clusters
gof.phreg               Goodness-of-Fit for Cox PH Regression
                        (Proportionality)
gofM_phreg              Goodness-of-Fit for Cox Covariates (Model
                        Matrix)
gofZ_phreg              Goodness-of-Fit for Cox Covariates (Linearity)
grouptable              Create Group Contingency Table from Clustered
                        Data
haplo                   haplo fun data
haplo_surv_discrete     Discrete Time-to-Event Haplotype Analysis
hfactioncpx12           hfaction, subset of block randomized study
                        HF-ACtion from WA package
iidBaseline             Influence Functions or IID Decomposition of
                        Baseline
ilap                    Inverse Laplace Transform Helper
interval_logitsurv_discrete
                        Discrete Time-to-Event Analysis with Interval
                        Censoring
ipw                     Inverse Probability of Censoring Weights
ipw2                    Inverse Probability of Censoring Weights
jumptimes               Extract Event (Jump) Times
km                      Kaplan-Meier with Robust Standard Errors
lifecourse              Life-course plot
lifetable.matrix        Life table
logitSurv               Proportional Odds Survival Model
mediatorSurv            Mediation analysis in survival context
medweight               Computes mediation weights
melanoma                The Melanoma Survival Data
mena                    Menarche data set
mets.options            Set global options for 'mets'
migr                    Migraine data
mlogit                  Multinomial Regression Based on phreg
multcif                 Multivariate Cumulative Incidence Function
                        example data set
np                      np data set
p11_binomial_twostage_RV
                        Concordance Probability from Twostage Model
phreg                   Fast Cox Proportional Hazards Regression
phreg_IPTW              IPTW Cox Regression (Inverse Probability of
                        Treatment Weighted)
phreg_rct               Lu-Tsiatis More Efficient Log-Rank for
                        Randomized Studies with Baseline Covariates
phreg_weibull           Weibull-Cox regression
plack_cif               plack Computes concordance for or.cif based
                        model, that is Plackett random effects model
plot.phreg              Plotting the baselines of stratified Cox
plot_twin               Scatter plot function
pmvn                    Multivariate normal distribution function
predict.mlogit          Predictions from Multinomial Regression
predict.phreg           Predictions from Proportional Hazards Model
print.casewise          prints Concordance test
print.summary_binregCV_multi
                        Print method for summary_binregCV_multi objects
prob_exceed_recurrent   Estimate the probability of exceeding k
                        recurrent events by time t
prt                     Prostate data set
random_cif              Random effects model for competing risks data
ratioATE                Ratio of Average Treatment Effects
rchaz                   Simulation of Piecewise Constant Hazard Model
                        (Cox)
rchazl                  Multiple Cause Piecewise Constant Hazard
                        Simulation
rcrisk                  Simulation of Piecewise constant hazard models
                        with two causes (Cox).
recreg                  Recurrent Events Regression with Terminal Event
recregIPCW              IPCW Estimator for Recurrent Events
recurrent_marginal      Marginal mean estimation for recurrent events
                        with a terminal event
resmeanATE              Average Treatment Effect for Restricted Mean
                        Time
resmeanIPCW             Restricted IPCW Mean for Censored Survival Data
resmean_phreg           Restricted Mean for Stratified Kaplan-Meier or
                        Cox Model
robust.basehaz.phreg    Robust Baseline Hazard Standard Errors
rr_cif                  Non-parametric Cumulative Incidence Functions
rweibullcox             Simulate observations from a Weibull
                        distribution
sim_ClaytonOakes        Simulate from the Clayton-Oakes frailty model
sim_ClaytonOakesWei     Simulate from the Clayton-Oakes frailty model
sim_GLcox               Simulation of Two-Stage Recurrent Events Data
sim_cif                 Simulation of Output from Cumulative Incidence
                        Regression Model
sim_multistate          Simulation of Illness-Death Model
sim_multistateII        Illness-Death Competing Risks with Two Causes
                        of Death
sim_phreg               Simulation of Output from Cox Model
sim_phregs              Simulation of Cause-Specific Cox Models
sim_recurrent           Simulate recurrent events with a single event
                        type and a terminal event
sim_recurrentII         Simulate recurrent events with two event types
                        and a terminal event
sim_recurrentTS         Simulate recurrent events from a two-stage
                        model with structured gamma frailties
sim_recurrent_ts        Simulate recurrent events from a two-stage Cox
                        or Ghosh-Lin model
strata-numeric          Stratified Cumulative and Summary Operations
summary.binregCV        Summary method for binregCV objects
summary.binregCV_list   Summary method for binregCV_list objects
summary.cor             Summary for dependence models for competing
                        risks
summaryGLM              Reporting OR (exp(coef)) from glm with binomial
                        link and glm predictions
summaryTimeobject       Summarize a Time-Varying Estimate with
                        Confidence Bands
surv_boxarea            Bivariate Survival Data on Rectangular Regions
survival-helpers        Survival Twostage Helpers
survivalG               G-Estimator for Cox and Fine-Gray Models
survival_twostage       Twostage Survival Model for Multivariate
                        Survival Data
test_casewise           Test for Independence Using Casewise
                        Concordance
test_conc               Compare Two Concordance Estimates
test_logrankRecurrent   Logrank-type test for comparing recurrent event
                        marginal means between groups
test_marginalMean       Pepe-Mori Test for Marginal Mean Comparison
tetrachoric             Estimate parameters from odds-ratio
tie_breaker             Break ties in event times for recurrent event
                        data
ttpd                    ttpd discrete survival data on interval form
twinbmi                 BMI data set
twinlm                  Classic twin model for quantitative traits
twinsim                 Simulate twin data
twinstut                Stutter data set
twostageMLE             Twostage Survival Model Fitted by Pseudo MLE
twostageREC             Fitting of Two-Stage Recurrent Events Random
                        Effects Model
