ExpectedTime            Returns expected hitting time from state i to
                        state j
HigherOrderMarkovChain-class
                        Higher order Markov Chains class
absorptionProbabilities
                        Absorption probabilities
aggregateStates         Aggregate a Markov chain's state space by
                        Kullback-Leibler minimization
assessIndependence      Test independence of consecutive states of an
                        empirical sequence
autoLump                Automatically aggregate a Markov chain by
                        spectral clustering
autoplot.markovchain    Plot a Markov chain with ggplot2
birthDeath              Build a birth-death Markov chain
blanden                 Mobility between income quartiles
closestReversible       Closest reversible approximation of a Markov
                        chain
committorAB             Calculates committor of a markovchain object
                        with respect to set A, B
conditionalDistribution
                        'conditionalDistribution' of a Markov Chain
craigsendi              CD4 cells counts on HIV Infects between zero
                        and six month
ctmc-class              Continuous time Markov Chains class
ctmcFit                 Function to fit a CTMC
dirichletChain          Markov chain from a Dirichlet process
entropyRate             Entropy rate of a Markov chain
expectedRewards         Expected Rewards for a markovchain
expectedRewardsBeforeHittingA
                        Expected first passage Rewards for a set of
                        states in a markovchain
firstPassage            First passage across states
firstPassageMultiple    function to calculate first passage
                        probabilities
fitHighOrderMultivarMC
                        Function to fit Higher Order Multivariate
                        Markov chain
fitHigherOrder          Functions to fit a higher order Markov chain
fitMTD                  Fit a mixture transition distribution (MTD)
                        model
freq2Generator          Returns a generator matrix corresponding to
                        frequency matrix
fundamentalMatrix       Fundamental matrix of an absorbing Markov chain
gamblersRuin            Build a gambler's ruin Markov chain
generatorToTransitionMatrix
                        Function to obtain the transition matrix from
                        the generator
higherOrderLogLik       Log-likelihood, deviance and information
                        criteria of a higher order Markov chain
higherOrderPredict      Next-state probabilities and simulation for
                        higher order Markov chains
hittingProbabilities    Hitting probabilities for markovchain
holson                  Holson data set
hommc-class             An S4 class for representing High Order
                        Multivariate Markovchain (HOMMC)
ictmc-class             An S4 class for representing Imprecise
                        Continuous Time Markovchains
identityChain           Identity Markov chain
impliedTimescales       Implied timescales of a Markov chain
impreciseProbabilityatT
                        Calculating full conditional probability using
                        lower rate transition matrix
inferHyperparam         Function to infer the hyperparameters for
                        Bayesian inference from an a priori matrix or a
                        data set
is.CTMCirreducible      Check if CTMC is irreducible
is.TimeReversible       checks if ctmc object is time reversible
is.accessible           Verify if a state j is reachable from state i.
is.irreducible          Function to check if a Markov chain is
                        irreducible (i.e. ergodic)
is.lumpable             Check exact lumpability of a Markov chain
is.regular              Check if a DTMC is regular
is.reversible           Check whether a Markov chain is reversible
is.stochasticallyMonotone
                        Check if a Markov chain is stochastically
                        monotone
kemenyConstant          Kemeny's constant of a Markov chain
kullback                Example from Kullback and Kupperman Tests for
                        Contingency Tables
lazyChain               Build a lazy version of a Markov chain
lump                    Aggregate a Markov chain over a partition
markovchain-class       Markov Chain class
markovchain-package     Easy Handling Discrete Time Markov Chains
markovchainFit          Function to fit a discrete Markov chain
markovchainList-class   Non homogeneus discrete time Markov Chains
                        class
markovchainListFit      markovchainListFit
markovchainSequence     Function to generate a sequence of states from
                        homogeneous Markov chains.
meanAbsorptionTime      Mean absorption time
meanFirstPassageTime    Mean First Passage Time for irreducible Markov
                        chains
meanNumVisits           Mean num of visits for markovchain, starting at
                        each state
meanRecurrenceTime      Mean recurrence time
mergeWith               Merge two Markov chains by convex combination
                        of their transition matrices
mixingTime              Mixing time of a Markov chain
multinomialConfidenceIntervals
                        A function to compute multinomial confidence
                        intervals of DTMC
name                    Method to retrieve name of markovchain object
name<-                  Method to set name of markovchain object
names,markovchain-method
                        Returns the states for a Markov chain object
noofVisitsDist          Expected fraction of the first N steps spent in
                        each state
normalizedEntropyRate   Normalized entropy rate of a Markov chain
ones                    Returns an Identity matrix
period                  Various function to perform structural analysis
                        of DTMC
populationGeneticsModel
                        Build a population-genetics Markov chain (Moran
                        or Wright-Fisher)
predictHommc            Simulate a higher order multivariate
                        markovchain
predictiveDistribution
                        predictiveDistribution
preproglucacon          Preprogluccacon DNA protein bases sequences
priorDistribution       priorDistribution
probabilityatT          Calculating probability from a ctmc object
rain                    Alofi island daily rainfall
randomMarkovChain       Random Markov chain
rctmc                   rctmc
redistribute            Evolution of a distribution over time
relaxationTime          Relaxation time of a Markov chain
rmarkovchain            Function to generate a sequence of states from
                        homogeneous or non-homogeneous Markov chains.
rouwenhorst             Discretize an AR(1) process into a Markov chain
                        (Rouwenhorst's method)
sales                   Sales Demand Sequences
selectOrder             Select the order of a Markov chain by
                        information criteria
sensitivity             Sensitivity of the stationary distribution to a
                        state's transition row
show,hommc-method       Function to display the details of hommc object
slem                    Second largest eigenvalue modulus (SLEM) of a
                        Markov chain
spectralGap             Spectral gap of a Markov chain
states                  Defined states of a transition matrix
steadyStates            Stationary states of a 'markovchain' object
subchain                Restrict a Markov chain to a subset of states
tauchen                 Discretize an AR(1) process into a Markov chain
                        (Tauchen's method)
timeCorrelations        Time correlations and time relaxations of
                        observed sequences
tm_abs                  Single Year Corporate Credit Rating
                        Transititions
toBoundedChain          Apply a boundary condition to a Markov chain's
                        first and last state
toDictionary            Represent a Markov chain as a plain R list
toDot                   Export the transition graph as Graphviz DOT or
                        Mermaid text
toFile                  Write or read a Markov chain to or from a file
toNthOrder              Return the n-step transition chain
topologicalEntropy      Topological entropy of a Markov chain
transition2Generator    Return the generator matrix for a corresponding
                        transition matrix
transitionProbability   Function to get the transition probabilities
                        from initial to subsequent states.
urnModel                Build an Ehrenfest urn model Markov chain
verifyMarkovProperty    Test the first-order Markov property of an
                        empirical sequence
zeros                   Matrix to create zeros
