| Barabasi.B_eff | Average the product of the outgoing and incoming degrees of nodes |
| Barabasi.X_eff | Average Nearest-Neighbor Activity |
| graph.from.csv | Loads a graph from Node / Edge CSV files |
| Michaelis.Menten | Michaelis-Menten equations |
| Michaelis.Menten.Fast | Optimized Michaelis-Menten equations |
| node.raw.score | Node score in network dynamics |
| node.removal.thread | Simulates Network Dynamics under Random Node Removal Perturbations. |
| node.score | Node score in network dynamics with significance test |
| perturbation.thread | Simulates Network Dynamics under Iterative Perturbations |