Utilities for 'nf-core' Modules


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Documentation for package ‘nfcore.utils’ version 0.0.4

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nfcore.utils-package The nf-core utils R package for Nextflow processes
create_log_session_info Log R session info
create_versions_yml Create versions.yml file
is_null_or_invalid Check if is 'NULL' or invalid
is_valid_string Check for Non-Empty, Non-Whitespace String
nfcore.utils The nf-core utils R package for Nextflow processes
nullify Turn “null” or empty strings into actual NULL
parse_arguments Parse out options from a string without recourse to optparse
process_end Process end of the workflow
process_inputs Process input parameters and files
read_delim_flexible Flexibly read CSV or TSV files
validate_boolean Check if value is a boolean
validate_double Check if value is a double number
validate_file Check if value is an existing file
validate_folder Check if value is an existing folder
validate_integer Check if value is an integer
valid_string Check for Non-Empty, Non-Whitespace String