alpha_summary           Alpha Diversity Summary
annotate_ms2            Annotate LC-MS/MS features
change_rt_to_seconds_or_minute
                        Change RT time to minutes or seconds
cluster_data            Cluster Features
combined_reference_database
                        Combine Databases
compute_molecular_formulas
                        Compute Molecular formula Other
convert_to_group_averages
                        Convert Samples to Group Averages
create_community_matrix
                        create community matrix
create_community_matrix_object
                        Create Community Matrix Object.
dist_ms2                Calculate pairwise distance between MS/MS
                        features.
dist_shared             Distance Shared
filter_cv_params        Filter Cv Parameters
filter_group_params     Filter Group Parameters
filter_insource_ions_params
                        Filter Insource Ions Parameters
filter_mispicked_ions_params
                        Filter Mispicked Ions Parameters
filter_peak_table       Filter Peak Table
generate_a_combined_table
                        Create a combined table
get_community_matrix    Get Community Matrix
get_molecular_formula_preds
                        Get Molecular Formula Predictions
get_ms1_data            Get MS1 Matches
get_ms2_matches         Get MS2 Matches
get_ms2_peaks_data      Get Peaks Data
get_reference_data      Get Reference Data
get_samples             Get Samples
import_all_data         Import all data
length.reference_database
                        Reference database length
modified_cosine_params
                        GNPS-like similarity between two MS/MS spectra
ms2_ms1_compare         Match your ms1 spectra to a ms2
mums2_example           Get file paths for examples
print.community_object
                        Print Community Object
print.reference_database
                        Print reference
rarefy_ms               Rarefy MS1 Feature Table
read_hmdb               Read HMDB database
read_msp                Create Reference Database
spec_entropy_params     Entropy similarity between two MS/MS spectra
