Package: phylopred
Type: Package
Title: Predicting Species Interactions from Phylogenetic Distance
Version: 0.1.0
Authors@R: c(
    person("Angel", "Robles", , "a.l.robles.fernandez@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-4674-4270")))
Description: Tools to model and predict host-parasite (and other pairwise
    species) interactions from phylogenetic distance under presence-only
    data. Provides pairwise host-sharing logistic models with
    cluster-aware bootstrap and slope comparison between clades,
    presence-only performance metrics (a threshold efficiency metric and
    a phylogenetic partial receiver operating characteristic (ROC) adapted
    from Peterson, Papes and Soberon (2008)
    <doi:10.1016/j.ecolmodel.2007.11.008>), positive-unlabeled
    host prediction, and leave-hosts-out validation. Methods build on
    Robles-Fernandez and Lira-Noriega (2017) <doi:10.3389/fams.2017.00017>.
License: MIT + file LICENSE
URL: https://github.com/alrobles/phylopred,
        https://alrobles.github.io/phylopred/
BugReports: https://github.com/alrobles/phylopred/issues
Encoding: UTF-8
LazyData: true
Imports: graphics, stats, utils, xplus
Suggests: ape, cofid, knitr, rmarkdown, testthat (>= 3.0.0)
Depends: R (>= 4.1.0)
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-09-30 15:18:57 UTC; alrobles
Author: Angel Robles [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4674-4270>)
Maintainer: Angel Robles <a.l.robles.fernandez@gmail.com>
Repository: CRAN
Date/Publication: 2026-10-14 12:12:07 UTC
Built: R 4.6.1; ; 2026-10-14 13:51:41 UTC; unix
