Package: VCFArrow
Title: Fast and Memory-Efficient Manipulation and Conversion of VCF
        Files
Version: 0.9.0
Authors@R: 
    person("Tomas", "Hrbek", , "hrbek@evoamazon.net", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0003-3239-7068"))
Description: Reads Variant Call Format (VCF) files into an S4 object whose
    genotypes are stored on disk as an 'Apache Arrow' dataset and loaded
    lazily, allowing large datasets to be processed with little memory.
    Provides functions to filter variants and samples, subset and merge
    datasets, compute summary statistics and diagnostic plots, write VCF
    files, and convert data to input formats of population genetic and
    phylogenetic software such as 'STRUCTURE', 'ADMIXTURE', 'PLINK',
    'EIGENSTRAT', 'Arlequin', 'GENEPOP', 'BayeScan', 'TreeMix', 'SNAPP'
    and 'adegenet'.
URL: https://legallab.github.io/VCFArrow/,
        https://github.com/legalLab/VCFArrow
BugReports: https://github.com/legalLab/VCFArrow/issues
Language: en-US
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1.0)
LinkingTo: Rcpp
Imports: Rcpp, arrow, cli, dplyr, ggplot2, methods, parallel, stats,
        stringr, tibble, utils, vctrs
Suggests: adegenet, knitr, rmarkdown, svglite
VignetteBuilder: knitr
SystemRequirements: zlib
Config/roxygen2/version: 8.1.0
NeedsCompilation: yes
Packaged: 2026-10-07 03:07:51 UTC; tomas
Author: Tomas Hrbek [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-3239-7068>)
Maintainer: Tomas Hrbek <hrbek@evoamazon.net>
Repository: CRAN
Date/Publication: 2026-10-16 13:20:38 UTC
Built: R 4.6.1; x86_64-apple-darwin20; 2026-10-16 14:34:47 UTC; unix
Archs: VCFArrow.so.dSYM
