Statistical Modelling for Infectious Disease Management
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Documentation for package ‘smidm’ version 1.0
Help Pages
| calculate_likelihood_negative_tests | Overall likelihood |
| calculate_likelihood_negative_tests_k | Likelihood K |
| calculate_posterior_no_infections | Negative analysis probability |
| calculate_prior_infections | A priori probability of further Infections |
| generate_data_extended | Generate data extended |
| get_expected_total_infections | Expected number of total symptomatic infections |
| get_incubation_day_distribution | Vector of day-specific probabilities of disease outbreak |
| get_infection_density | Dataframe with dates and probability of infection |
| get_infectiousness_density | Dataframe with dates and infectiousness probability |
| get_misc_infection_density | Dataframe with dates and probability of infection |
| get_serial_interval_density | Dataframe with dates and contact symptom begin probability |
| get_test_sensitivities | Generate info |
| predict_future_infections | Prediction of future infections per day |
| p_onePrimaryMore | One more primary a priori probability |