Acoustic Template Detection in R

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Documentation for package ‘monitoR’ version 1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

monitoR-package	Automated Acoustic Monitoring-overview and examples
batchBinMatch	Batch Template Detection
batchCorMatch	Batch Template Detection
bindEvents	Summarize/Archive Manually Derived Sound Events
binMatch	Calculate Spectrogram Template Matching Scores
binTemplate-class	Class '"Template"'
binTemplateList-class	Class '"TemplateList"'
btnw	Black-Throated Green Warbler (_Setophaga virens_) Song
changeSampRate	Resample Wave objects
collapseClips	Summarize/Archive Song Events
combineBinTemplates	Combine Acoustic Template Lists
combineCorTemplates	Combine Acoustic Template Lists
compareTemplates	Compare Performance of Templates
corMatch	Calculate Spectrogram Template Matching Scores
corTemplate-class	Class '"Template"'
corTemplateList-class	Class '"TemplateList"'
cutWave	Extract Shorter Wave Objects from other Wave Objects
dbDownloadCardRecorderID	Retrieve Card-Recorder ID Values or Survey Names from a Database
dbDownloadResult	Create 'detectionList' Objects from Data Stored in a Database
dbDownloadSurvey	Retrieve Card-Recorder ID Values or Survey Names from a Database
dbDownloadTemplate	Retrieve templates from an acoustics database
dbSchema	Upload a MySQL Database Schema to Create Tables in an Acoustics Database
dbUploadAnno	Upload Spectrogram Annotations to an Acoustics Database
dbUploadResult	Upload Detection Results to an Acoustics Database
dbUploadSurvey	Upload Survey Metadata to an Acoustics Database
dbUploadTemplate	Upload Acoustic Templates to a Database
detectionList-class	Class '"detectionList"'
eventEval	Evaluate Detected Events with Known Event Sources and Times
fileCopyRename	Copy and Rename Sound Files from Portable Media
findPeaks	Find Score Peaks and Detections in a 'templateScores' Object
getDetections	Extract Detections or Peaks from a 'detectionList' Object
getPeaks	Extract Detections or Peaks from a 'detectionList' Object
getTemplates	Extract a Template List
gray.1	Color Vectors for Spectrograms
gray.2	Color Vectors for Spectrograms
gray.3	Color Vectors for Spectrograms
makeBinTemplate	Make an Acoustic Template
makeCorTemplate	Make an Acoustic Template
monitoR	Automated Acoustic Monitoring-overview and examples
mp3Subsamp	Extract Short Surveys from Longer mp3 Recordings
oven	Ovenbird (_Seiurus aurocapilla_) Song
plot-method	Methods for the 'plot' Function
plot-methods	Methods for the 'plot' Function
rainbow.1	Color Vectors for Spectrograms
readBinTemplates	Read Acoustic Templates from a Local Disk
readCorTemplates	Read Acoustic Templates from a Local Disk
readMP3	Read MP3 Files into a Wave Object
show-method	Methods for the 'show' and 'summary' Functions
show-methods	Methods for the 'show' and 'summary' Functions
showPeaks	View or Verify Detections or Peaks
specCols	Color Vectors for Spectrograms
summary-method	Methods for the 'show' and 'summary' Functions
summary-methods	Methods for the 'show' and 'summary' Functions
survey	Sample Acoustic Survey (Short)
survey_anno	Annotations for 'survey'
Template-class	Class '"Template"'
templateComment	Query or Set Template Cutoffs
templateComment<-	Query or Set Template Cutoffs
templateCutoff	Query or Set Template Cutoffs
templateCutoff<-	Query or Set Template Cutoffs
TemplateList-class	Class '"TemplateList"'
templateNames	Names of Templates
templateNames<-	Names of Templates
templatePath	Song clip path of Templates
templatePath<-	Song clip path of Templates
templateScores-class	Class '"templateScores"'
timeAlign	Condense Detections or Peaks from Multiple Templates
topo.1	Color Vectors for Spectrograms
viewSpec	Interactively View and Annotate Spectrograms
writeBinTemplates	Write Acoustic Templates to Text Files
writeCorTemplates	Write Acoustic Templates to Text Files
[-method	Indexing (Extraction) Methods for 'monitoR' Package
[-methods	Indexing (Extraction) Methods for 'monitoR' Package