Collection of Correlation, Agreement, and Reliability Estimators
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Documentation for package ‘matrixCorr’ version 0.12.2
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A B C D E G H I K M P R S T V W X misc
-- A --
| as.data.frame.corr_edge_list | Edge-list data-frame view |
-- B --
| ba | Bland-Altman statistics with confidence intervals |
| ba_rm | Bland-Altman for repeated measurements |
| bicor | Biweight mid-correlation (bicor) |
| biserial | Biserial Correlation Between Continuous and Binary Variables |
| biweight_mid_corr | Deprecated Compatibility Wrappers |
| bland_altman | Deprecated Compatibility Wrappers |
| bland_altman_repeated | Deprecated Compatibility Wrappers |
-- C --
| ccc | Pairwise Lin's concordance correlation coefficient |
| ccc_glmm | Poisson GLMM concordance correlation for count agreement |
| ccc_lmm_reml | Deprecated Compatibility Wrappers |
| ccc_pairwise_u_stat | Deprecated Compatibility Wrappers |
| ccc_rm_reml | Concordance Correlation via REML (Linear Mixed-Effects Model) |
| ccc_rm_ustat | Repeated-Measures Lin's Concordance Correlation Coefficient (CCC) |
| ci | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.ba | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.ba_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.ba_repeated | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.ba_repeated_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.ccc | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.ccc_ci | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.ccc_glmm | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.cia | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.cia_ci | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.cia_rm | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.cohen_kappa | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.corr_result | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.default | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.gwet_ac | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.icc | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.icc_overall | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.icc_rm_reml | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.krippendorff_alpha | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.multirater_kappa | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.partial_corr | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.prob_agree | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.rmcorr | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.rmcorr_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| ci.weighted_kappa | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| cia | Coefficient of Individual Agreement |
| cia_rm | Repeated-Measures Coefficient of Individual Agreement |
| coef.ccc_glmm | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| coef.corr_result | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| cohen_kappa | Pairwise Cohen's Kappa for Nominal Ratings |
| confint.ba | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.ba_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.ba_repeated | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.ba_repeated_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.ccc | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.ccc_ci | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.ccc_glmm | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.chatterjee_xi_scalar | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.cia | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.cia_ci | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.cia_rm | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.cohen_kappa | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.corr_result | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.gwet_ac | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.icc | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.icc_overall | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.icc_rm_reml | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.krippendorff_alpha | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.multirater_kappa | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.partial_corr | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.prob_agree | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.rmcorr | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.rmcorr_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.summary.corr_result | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.summary.matrixCorr | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| confint.weighted_kappa | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
-- D --
| dcor | Pairwise Distance Correlation (dCor) |
| deprecated-matrixCorr | Deprecated Compatibility Wrappers |
| diag.bicor | Biweight mid-correlation (bicor) |
| distance_corr | Deprecated Compatibility Wrappers |
-- E --
| estimate | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.ba | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.ba_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.ba_repeated | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.ba_repeated_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.ccc_glmm | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.corr_result | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.default | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.partial_corr | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.summary.corr_result | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| estimate.summary.matrixCorr | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
-- G --
| gwet_ac | Gwet's AC1 and AC2 Agreement Coefficients |
-- H --
| hsic | Pairwise Hilbert-Schmidt Independence Criterion |
-- I --
| icc | Intraclass Correlation for Wide Data |
| icc_rm_reml | Repeated-Measures Intraclass Correlation via REML |
-- K --
| kendall_tau | Pairwise (or Two-Vector) Kendall's Tau Rank Correlation |
| krippendorff_alpha | Krippendorff's Alpha Reliability Coefficient |
-- M --
| multirater_kappa | Multi-Rater Kappa for Nominal Ratings |
-- P --
| partial_correlation | Deprecated Compatibility Wrappers |
| pbcor | Percentage bend correlation |
| pcorr | Partial correlation matrix (sample / ridge / OAS / graphical lasso) |
| pearson_corr | Pairwise Pearson correlation |
| plot.ba | Bland-Altman statistics with confidence intervals |
| plot.ba_matrix | Bland-Altman statistics with confidence intervals |
| plot.ba_repeated | Bland-Altman for repeated measurements |
| plot.ba_repeated_matrix | Bland-Altman for repeated measurements |
| plot.bicor | Biweight mid-correlation (bicor) |
| plot.biserial_corr | Biserial Correlation Between Continuous and Binary Variables |
| plot.ccc | Pairwise Lin's concordance correlation coefficient |
| plot.cia | Coefficient of Individual Agreement |
| plot.cia_rm | Repeated-Measures Coefficient of Individual Agreement |
| plot.cohen_kappa | Pairwise Cohen's Kappa for Nominal Ratings |
| plot.corr_edge_list | S3 Plot for Edge-List Correlation Results |
| plot.corr_matrix | S3 Plot for Dense Correlation Results |
| plot.corr_sparse | S3 Plot for Sparse Correlation Results |
| plot.dcor | Pairwise Distance Correlation (dCor) |
| plot.gwet_ac | Gwet's AC1 and AC2 Agreement Coefficients |
| plot.hsic | Pairwise Hilbert-Schmidt Independence Criterion |
| plot.kendall_matrix | Pairwise (or Two-Vector) Kendall's Tau Rank Correlation |
| plot.krippendorff_alpha | Krippendorff's Alpha Reliability Coefficient |
| plot.multirater_kappa | Multi-Rater Kappa for Nominal Ratings |
| plot.partial_corr | Partial correlation matrix (sample / ridge / OAS / graphical lasso) |
| plot.pbcor | Percentage bend correlation |
| plot.pearson_corr | Pairwise Pearson correlation |
| plot.polychoric_corr | Pairwise Polychoric Correlation |
| plot.polyserial_corr | Polyserial Correlation Between Continuous and Ordinal Variables |
| plot.prob_agree | Plot probability-of-agreement results |
| plot.rmcorr | Methods for Pairwise rmcorr Objects |
| plot.rmcorr_matrix | Methods for rmcorr Matrix Objects |
| plot.robust_dcor | Robust Distance Correlation |
| plot.schafer_corr | Shrinkage Correlation |
| plot.shrinkage_corr | Shrinkage Correlation |
| plot.skipped_corr | Pairwise skipped correlation |
| plot.spearman_rho | Pairwise Spearman's rank correlation |
| plot.tetrachoric_corr | Pairwise Tetrachoric Correlation |
| plot.wincor | Pairwise Winsorized correlation |
| polychoric | Pairwise Polychoric Correlation |
| polyserial | Polyserial Correlation Between Continuous and Ordinal Variables |
| print.ba | Bland-Altman statistics with confidence intervals |
| print.ba_matrix | Bland-Altman statistics with confidence intervals |
| print.ba_repeated | Bland-Altman for repeated measurements |
| print.ba_repeated_matrix | Bland-Altman for repeated measurements |
| print.bicor | Biweight mid-correlation (bicor) |
| print.biserial_corr | Biserial Correlation Between Continuous and Binary Variables |
| print.ccc | Pairwise Lin's concordance correlation coefficient |
| print.ccc_ci | S3 print for legacy class 'ccc_ci' |
| print.chatterjee_xi | Pairwise Chatterjee Rank Correlation |
| print.chatterjee_xi_scalar | Pairwise Chatterjee Rank Correlation |
| print.cia | Coefficient of Individual Agreement |
| print.cia_ci | Coefficient of Individual Agreement |
| print.cia_rm | Repeated-Measures Coefficient of Individual Agreement |
| print.cohen_kappa | Pairwise Cohen's Kappa for Nominal Ratings |
| print.corr_edge_list | Print Edge-List Correlation Results |
| print.dcor | Pairwise Distance Correlation (dCor) |
| print.gwet_ac | Gwet's AC1 and AC2 Agreement Coefficients |
| print.hsic | Pairwise Hilbert-Schmidt Independence Criterion |
| print.icc | Intraclass Correlation for Wide Data |
| print.icc_overall | Intraclass Correlation for Wide Data |
| print.icc_rm_reml | Repeated-Measures Intraclass Correlation via REML |
| print.kendall_matrix | Pairwise (or Two-Vector) Kendall's Tau Rank Correlation |
| print.krippendorff_alpha | Krippendorff's Alpha Reliability Coefficient |
| print.matrixCorr_ccc | Print method for matrixCorr CCC objects |
| print.matrixCorr_ccc_ci | Print method for matrixCorr CCC objects with CIs |
| print.multirater_kappa | Multi-Rater Kappa for Nominal Ratings |
| print.partial_corr | Partial correlation matrix (sample / ridge / OAS / graphical lasso) |
| print.pbcor | Percentage bend correlation |
| print.pearson_corr | Pairwise Pearson correlation |
| print.polychoric_corr | Pairwise Polychoric Correlation |
| print.polyserial_corr | Polyserial Correlation Between Continuous and Ordinal Variables |
| print.rmcorr | Methods for Pairwise rmcorr Objects |
| print.rmcorr_matrix | Methods for rmcorr Matrix Objects |
| print.robust_dcor | Robust Distance Correlation |
| print.schafer_corr | Shrinkage Correlation |
| print.shrinkage_corr | Shrinkage Correlation |
| print.skipped_corr | Pairwise skipped correlation |
| print.spearman_rho | Pairwise Spearman's rank correlation |
| print.summary.ba | Bland-Altman statistics with confidence intervals |
| print.summary.ba_matrix | Bland-Altman statistics with confidence intervals |
| print.summary.bicor | Biweight mid-correlation (bicor) |
| print.summary.biserial_corr | Biserial Correlation Between Continuous and Binary Variables |
| print.summary.ccc | Pairwise Lin's concordance correlation coefficient |
| print.summary.ccc_rm_reml | Summary Method for 'ccc_rm_reml' Objects |
| print.summary.chatterjee_xi_scalar | Pairwise Chatterjee Rank Correlation |
| print.summary.cia | Coefficient of Individual Agreement |
| print.summary.cia_rm | Repeated-Measures Coefficient of Individual Agreement |
| print.summary.cohen_kappa | Pairwise Cohen's Kappa for Nominal Ratings |
| print.summary.corr_result | Print Standardized Correlation Summaries |
| print.summary.dcor | Pairwise Distance Correlation (dCor) |
| print.summary.gwet_ac | Gwet's AC1 and AC2 Agreement Coefficients |
| print.summary.hsic | Pairwise Hilbert-Schmidt Independence Criterion |
| print.summary.icc | Intraclass Correlation for Wide Data |
| print.summary.icc_overall | Intraclass Correlation for Wide Data |
| print.summary.icc_rm_reml | Repeated-Measures Intraclass Correlation via REML |
| print.summary.kendall_matrix | Pairwise (or Two-Vector) Kendall's Tau Rank Correlation |
| print.summary.krippendorff_alpha | Krippendorff's Alpha Reliability Coefficient |
| print.summary.latent_corr | Summary Method for Latent Correlation Matrices |
| print.summary.matrixCorr | Summary Method for Correlation Matrices |
| print.summary.multirater_kappa | Multi-Rater Kappa for Nominal Ratings |
| print.summary.partial_corr | Partial correlation matrix (sample / ridge / OAS / graphical lasso) |
| print.summary.pbcor | Percentage bend correlation |
| print.summary.pearson_corr | Pairwise Pearson correlation |
| print.summary.polychoric_corr | Pairwise Polychoric Correlation |
| print.summary.polyserial_corr | Polyserial Correlation Between Continuous and Ordinal Variables |
| print.summary.rmcorr | Methods for Pairwise rmcorr Objects |
| print.summary.rmcorr_matrix | Methods for rmcorr Matrix Objects |
| print.summary.skipped_corr | Pairwise skipped correlation |
| print.summary.spearman_rho | Pairwise Spearman's rank correlation |
| print.summary.tetrachoric_corr | Pairwise Tetrachoric Correlation |
| print.summary.wincor | Pairwise Winsorized correlation |
| print.tetrachoric_corr | Pairwise Tetrachoric Correlation |
| print.weighted_kappa | Pairwise Weighted Cohen's Kappa for Ordered Ratings |
| print.wincor | Pairwise Winsorized correlation |
| prob_agree | Probability of Agreement for Reliability Curves |
-- R --
| rmcorr | Repeated-Measures Correlation (rmcorr) |
| rmcorr_weighted | Repeated-Measures Correlation (rmcorr) |
| robust_dcor | Robust Distance Correlation |
-- S --
| schafer_corr | Shrinkage Correlation |
| shrinkage_corr | Shrinkage Correlation |
| skipped_corr | Pairwise skipped correlation |
| skipped_corr_masks | Pairwise skipped correlation |
| spearman_rho | Pairwise Spearman's rank correlation |
| summary.ba | Bland-Altman statistics with confidence intervals |
| summary.ba_matrix | Bland-Altman statistics with confidence intervals |
| summary.bicor | Biweight mid-correlation (bicor) |
| summary.biserial_corr | Biserial Correlation Between Continuous and Binary Variables |
| summary.ccc | Pairwise Lin's concordance correlation coefficient |
| summary.ccc_rm_reml | Summary Method for 'ccc_rm_reml' Objects |
| summary.chatterjee_xi_scalar | Pairwise Chatterjee Rank Correlation |
| summary.cia | Coefficient of Individual Agreement |
| summary.cia_rm | Repeated-Measures Coefficient of Individual Agreement |
| summary.cohen_kappa | Pairwise Cohen's Kappa for Nominal Ratings |
| summary.corr_edge_list | S3 Summary for Edge-List Correlation Results |
| summary.corr_matrix | S3 Summary for Dense Correlation Results |
| summary.corr_sparse | S3 Summary for Sparse Correlation Results |
| summary.dcor | Pairwise Distance Correlation (dCor) |
| summary.gwet_ac | Gwet's AC1 and AC2 Agreement Coefficients |
| summary.hsic | Pairwise Hilbert-Schmidt Independence Criterion |
| summary.icc | Intraclass Correlation for Wide Data |
| summary.icc_overall | Intraclass Correlation for Wide Data |
| summary.icc_rm_reml | Repeated-Measures Intraclass Correlation via REML |
| summary.kendall_matrix | Pairwise (or Two-Vector) Kendall's Tau Rank Correlation |
| summary.krippendorff_alpha | Krippendorff's Alpha Reliability Coefficient |
| summary.multirater_kappa | Multi-Rater Kappa for Nominal Ratings |
| summary.partial_corr | Partial correlation matrix (sample / ridge / OAS / graphical lasso) |
| summary.pbcor | Percentage bend correlation |
| summary.pearson_corr | Pairwise Pearson correlation |
| summary.polychoric_corr | Pairwise Polychoric Correlation |
| summary.polyserial_corr | Polyserial Correlation Between Continuous and Ordinal Variables |
| summary.rmcorr | Methods for Pairwise rmcorr Objects |
| summary.rmcorr_matrix | Methods for rmcorr Matrix Objects |
| summary.robust_dcor | Robust Distance Correlation |
| summary.schafer_corr | Shrinkage Correlation |
| summary.shrinkage_corr | Shrinkage Correlation |
| summary.skipped_corr | Pairwise skipped correlation |
| summary.spearman_rho | Pairwise Spearman's rank correlation |
| summary.tetrachoric_corr | Pairwise Tetrachoric Correlation |
| summary.wincor | Pairwise Winsorized correlation |
-- T --
| tetrachoric | Pairwise Tetrachoric Correlation |
| tidy | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| tidy.ba | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| tidy.ba_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| tidy.ba_repeated | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| tidy.ba_repeated_matrix | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| tidy.corr_result | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| tidy.default | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| tidy.partial_corr | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| tidy.summary.corr_result | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
| tidy.summary.matrixCorr | Access MatrixCorr Estimates, Confidence Intervals, and Tidy Results |
-- V --
| view_corr_shiny | Interactive Shiny viewer for matrixCorr objects |
| view_rmcorr_shiny | Interactive Shiny Viewer for Repeated-Measures Correlation |
-- W --
| weighted_kappa | Pairwise Weighted Cohen's Kappa for Ordered Ratings |
| wincor | Pairwise Winsorized correlation |
-- X --
| xi_corr | Pairwise Chatterjee Rank Correlation |
-- misc --
| $.summary.corr_result | Summary Accessor for Correlation Summaries |
| [[.summary.corr_result | Summary Accessor for Correlation Summaries |