markovchain-package	markovchain-package
!=,markovchain,markovchain-method	markovchain-class
*,markovchain,markovchain-method	markovchain-class
*,markovchain,matrix-method	markovchain-class
*,markovchain,numeric-method	markovchain-class
*,matrix,markovchain-method	markovchain-class
*,numeric,markovchain-method	markovchain-class
.asHtest	dot-asHtest
.markovchainFitRcpp	markovchainFit
==,markovchain,markovchain-method	markovchain-class
absorbingStates	structuralAnalysis
absorbingStates,markovchain-method	markovchain-class
absorptionProbabilities	absorptionProbabilities
absorptionProbabilities,markovchain-method	markovchain-class
aggregateStates	aggregateStates
aggregateStates,markovchain-method	aggregateStates
assessIndependence	assessIndependence
assessOrder	statisticalTests
assessStationarity	statisticalTests
autoLump	autoLump
autoLump,markovchain-method	autoLump
autoplot.markovchain	autoplot.markovchain
birthDeath	birthDeath
blanden	blanden
canonicForm	structuralAnalysis
canonicForm,markovchain-method	markovchain-class
closestReversible	closestReversible
closestReversible,markovchain-method	closestReversible
coerce,data.frame,markovchain-method	markovchain-class
coerce,etm,markovchain-method	markovchain-class
coerce,markovchain,data.frame-method	markovchain-class
coerce,markovchain,igraph-method	markovchain-class
coerce,markovchain,matrix-method	markovchain-class
coerce,markovchain,sparseMatrix-method	markovchain-class
coerce,Matrix,markovchain-method	markovchain-class
coerce,matrix,markovchain-method	markovchain-class
coerce,msm,markovchain-method	markovchain-class
coerce,msm.est,markovchain-method	markovchain-class
coerce,sparseMatrix,markovchain-method	markovchain-class
coerce,table,markovchain-method	markovchain-class
committorAB	committorAB
communicatingClasses	structuralAnalysis
communicatingClasses,markovchain-method	markovchain-class
conditionalDistribution	conditionalDistribution
conditionalDistribution,markovchain-method	markovchain-class
craigsendi	craigsendi
createSequenceMatrix	markovchainFit
ctmc-class	ctmc-class
ctmcFit	ctmcFit
dim,ctmc-method	ctmc-class
dim,markovchain-method	markovchain-class
dim,markovchainList-method	markovchainList-class
dirichletChain	dirichletChain
entropyRate	entropyRate
entropyRate,markovchain-method	entropyRate
expectedRewards	expectedRewards
expectedRewardsBeforeHittingA	expectedRewardsBeforeHittingA
ExpectedTime	ExpectedTime
firstPassage	firstPassage
firstPassageMultiple	firstPassageMultiple
fitHigherOrder	fitHigherOrder
fitHighOrderMultivarMC	fitHighOrderMultivarMC
fitMTD	fitMTD
freq2Generator	freq2Generator
fromDictionary	toDictionary
fromFile	toFile
fundamentalMatrix	fundamentalMatrix
gamblersRuin	gamblersRuin
generatorToTransitionMatrix	generatorToTransitionMatrix
higherOrderLogLik	higherOrderLogLik
HigherOrderMarkovChain-class	HigherOrderMarkovChain-class
higherOrderPredict	higherOrderPredict
higherOrderSimulate	higherOrderPredict
hittingProbabilities	hittingProbabilities
hittingProbabilities,markovchain-method	markovchain-class
holson	holson
hommc	hommc-class
hommc-class	hommc-class
ictmc	ictmc-class
ictmc-class	ictmc-class
identityChain	identityChain
impliedTimescales	impliedTimescales
impliedTimescales,markovchain-method	impliedTimescales
impreciseProbabilityatT	impreciseProbabilityatT
inferHyperparam	inferHyperparam
initialize,ctmc_method	ctmc-class
initialize,markovchain-method	markovchain-class
is.accessible	is.accessible
is.accessible,markovchain,character,character-method	markovchain-class
is.accessible,markovchain,missing,missing-method	markovchain-class
is.CTMCirreducible	is.CTMCirreducible
is.irreducible	is.irreducible
is.irreducible,markovchain-method	markovchain-class
is.lumpable	is.lumpable
is.lumpable,markovchain-method	is.lumpable
is.regular	is.regular
is.regular,markovchain-method	markovchain-class
is.reversible	is.reversible
is.reversible,markovchain-method	is.reversible
is.stochasticallyMonotone	is.stochasticallyMonotone
is.stochasticallyMonotone,ANY-method	is.stochasticallyMonotone
is.stochasticallyMonotone,markovchain-method	is.stochasticallyMonotone
is.stochasticallyMonotone,matrix-method	is.stochasticallyMonotone
is.TimeReversible	is.TimeReversible
kemenyConstant	kemenyConstant
kemenyConstant,markovchain-method	kemenyConstant
kullback	kullback
lazyChain	lazyChain
lazyChain,markovchain-method	lazyChain
lump	lump
lump,markovchain-method	lump
markovchain	markovchain-package
markovchain-class	markovchain-class
markovchainFit	markovchainFit
markovchainList-class	markovchainList-class
markovchainListFit	markovchainListFit
markovchainSequence	markovchainSequence
meanAbsorptionTime	meanAbsorptionTime
meanAbsorptionTime,markovchain-method	markovchain-class
meanFirstPassageTime	meanFirstPassageTime
meanFirstPassageTime,markovchain,character-method	markovchain-class
meanFirstPassageTime,markovchain,missing-method	markovchain-class
meanNumVisits	meanNumVisits
meanNumVisits,markovchain-method	markovchain-class
meanRecurrenceTime	meanRecurrenceTime
meanRecurrenceTime,markovchain-method	markovchain-class
mergeWith	mergeWith
mergeWith,markovchain,markovchain-method	mergeWith
mixingTime	mixingTime
mixingTime,markovchain-method	mixingTime
multinomialConfidenceIntervals	multinomialConfidenceIntervals
name	getName
name,markovchain-method	getName
name<-	setName
name<-,markovchain-method	setName
names,markovchain-method	names
names<-,markovchain-method	markovchain-class
noofVisitsDist	noofVisitsDist
normalizedEntropyRate	normalizedEntropyRate
normalizedEntropyRate,markovchain-method	normalizedEntropyRate
ones	ones
period	structuralAnalysis
plot,ctmc,missing-method	ctmc-class
plot,markovchain,missing-method	markovchain-class
populationGeneticsModel	populationGeneticsModel
predict,markovchain-method	markovchain-class
predict,markovchainList-method	markovchainList-class
predictHommc	predictHommc
predictiveDistribution	predictiveDistribution
preproglucacon	preproglucacon
print,markovchain-method	markovchain-class
print,markovchainList-method	markovchainList-class
priorDistribution	priorDistribution
probabilityatT	probabilityatT
rain	rain
randomMarkovChain	randomMarkovChain
rctmc	rctmc
recurrentClasses	structuralAnalysis
recurrentClasses,markovchain-method	markovchain-class
recurrentStates	structuralAnalysis
recurrentStates,markovchain-method	markovchain-class
redistribute	redistribute
redistribute,markovchain-method	redistribute
relaxationTime	relaxationTime
relaxationTime,markovchain-method	relaxationTime
rmarkovchain	rmarkovchain
rouwenhorst	rouwenhorst
sales	sales
selectOrder	selectOrder
sensitivity	sensitivity
sensitivity,markovchain-method	sensitivity
seq2freqProb	fitHigherOrder
seq2matHigh	fitHigherOrder
show,hommc-method	hommc-show
show,markovchain-method	markovchain-class
show,markovchainList-method	markovchainList-class
slem	slem
slem,markovchain-method	slem
sort,markovchain-method	markovchain-class
spectralGap	spectralGap
spectralGap,markovchain-method	spectralGap
states	states
states,ctmc-method	ctmc-class
states,markovchain-method	states
steadyStates	steadyStates
steadyStates,ctmc-method	ctmc-class
steadyStates,markovchain-method	markovchain-class
subchain	subchain
subchain,markovchain-method	subchain
summary,markovchain-method	markovchain-class
t,markovchain-method	markovchain-class
tauchen	tauchen
timeCorrelations	timeCorrelations
timeCorrelations,markovchain-method	timeCorrelations
timeRelaxations	timeCorrelations
timeRelaxations,markovchain-method	timeCorrelations
tm_abs	tm_abs
toBoundedChain	toBoundedChain
toBoundedChain,markovchain-method	toBoundedChain
toDictionary	toDictionary
toDictionary,markovchain-method	toDictionary
toDot	toDot
toDot,markovchain-method	toDot
toFile	toFile
toFile,markovchain-method	toFile
toMermaid	toDot
toMermaid,markovchain-method	toDot
toNthOrder	toNthOrder
topologicalEntropy	topologicalEntropy
topologicalEntropy,markovchain-method	topologicalEntropy
transientClasses	structuralAnalysis
transientClasses,markovchain-method	markovchain-class
transientStates	structuralAnalysis
transientStates,markovchain-method	markovchain-class
transition2Generator	transition2Generator
transitionProbability	transitionProbability
transitionProbability,markovchain-method	transitionProbability
urnModel	urnModel
verifyEmpiricalToTheoretical	statisticalTests
verifyHomogeneity	statisticalTests
verifyMarkovProperty	statisticalTests
zeros	zeros
[,markovchain,ANY,ANY,ANY-method	markovchain-class
[[,markovchainList-method	markovchainList-class
^,markovchain,numeric-method	markovchain-class
