Gene Expression Decomposition and Integration
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘gedi2’ version 2.3.4
Help Pages
| check_optional_dependencies | Check GEDI Optional Dependencies |
| CreateGEDIObject | Create GEDI Object |
| gedi_to_seurat | Convert GEDI Model to Seurat Object |
| install_optional_dependencies | List Optional GEDI Dependencies |
| list_h5_structure | List structure of H5 or H5AD file |
| plot_convergence | Plot Training Convergence |
| plot_dispersion | Plot Dispersion Analysis |
| plot_embedding | Plot Embedding with Improved API |
| plot_features | Plot Multiple Features on Embedding |
| plot_feature_ratio | Plot Two-Feature Comparison |
| plot_vector_field | Plot Vector Field from Dynamics Analysis |
| read_h5 | Read 10X Genomics H5 file |
| read_h5ad | Read H5AD file and convert to sparse matrix |
| seurat_to_gedi | Convert Seurat Object to GEDI Model |
| write_h5ad | Write GEDI model to H5AD file |