Package: bioLeak
Type: Package
Title: Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
Version: 0.3.0
Authors@R: c(
    person("Selcuk", "Korkmaz", role = c("aut","cre"), email = "selcukorkmaz@gmail.com",
           comment = c(ORCID = "0000-0003-4632-6850"))
    )
Description: Prevents and detects information leakage in biomedical machine learning.
  Provides leakage-resistant split policies (subject-grouped, batch-blocked, study leave-out, time-ordered),
  guarded preprocessing (train-only imputation, normalization, filtering, feature selection),
  cross-validated fitting with common learners, permutation-gap auditing, batch and fold association tests,
  and duplicate detection.
License: MIT + file LICENSE
URL: https://github.com/selcukorkmaz/bioLeak
BugReports: https://github.com/selcukorkmaz/bioLeak/issues
Encoding: UTF-8
Depends: R (>= 4.3)
Imports: digest, generics, methods, stats, utils, SummarizedExperiment,
        graphics, hardhat, parsnip
Suggests: BiocParallel, cli, dials, FNN, future, future.apply, ggplot2,
        glmnet, mice, missForest, pkgload, ranger, randomForest,
        recipes, RANN, rsample, tune, VIM, withr, workflows, xgboost,
        yardstick, pROC, PRROC, survival, knitr, rmarkdown, testthat
        (>= 3.0.0)
biocViews: Software, Classification, Regression, Survival,
        Reproducibility, QualityControl, GeneExpression, Workflow
VignetteBuilder: knitr
Config/testthat/edition: 3
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-03-05 19:01:06 UTC; selcuk
Author: Selcuk Korkmaz [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4632-6850>)
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Repository: CRAN
Date/Publication: 2026-03-05 19:20:09 UTC
Built: R 4.5.2; ; 2026-03-05 23:37:33 UTC; unix
