Prediction and Clustering on the Torus by Conformal Prediction

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Documentation for package ‘ClusTorus’ version 0.2.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

ang.dist	Angular distance
ang.minus	Angular subtraction
ang.pdist	Pairwise L2 angular distance
clus.torus	Clustering on the torus by conformal prediction
cluster.assign.torus	Clustering by connected components of ellipsoids
cp.torus.kde	Conformal prediction set indices with kernel density estimation
data_6VXX	6VXX: Structure of the SARS-CoV-2 spike glycoprotein(closed state)
ellip.kmeans.torus	K-Means Clustering to K-Spheres Clustering on Torus
EMsinvMmix	Fitting mixtures of bivariate von Mises distribution
grid.torus	Grid on torus
hyperparam.alpha	Selecting optimal level based on the runs of the number of clusters
hyperparam.J	Selecting optimal number of mixture components based on various criteria
hyperparam.torus	Selecting optimal hyperparameters for the conformal prediction set
icp.torus	Conformity score for inductive prediction sets
icp.torus.eval	Inductive prediction sets for each level
ILE	ILE: Structure of the Isoleucine
kde.torus	Kernel density estimation using circular von Mises distribution
kmeans.torus	K-Means Clustering on Torus
logLik.icp.torus	Conformity score for inductive prediction sets
on.torus	Transform the angular data to be on principal interval
plot.clus.torus	Clustering on the torus by conformal prediction
plot.cluster.obj	Clustering by connected components of ellipsoids
plot.cp.torus.kde	Conformal prediction set indices with kernel density estimation
plot.hyperparam.alpha	Selecting optimal level based on the runs of the number of clusters
plot.hyperparam.J	Selecting optimal number of mixture components based on various criteria
plot.hyperparam.torus	Selecting optimal hyperparameters for the conformal prediction set
plot.icp.torus	Conformity score for inductive prediction sets
predict.icp.torus	Conformity score for inductive prediction sets
predict.kmeans.torus	K-Means Clustering on Torus
SARS_CoV_2	SARS-CoV-2: chain B of Structure of the SARS-CoV-2 spike glycoprotein(closed state)
tor.minus	Toroidal subtraction
toydata1	toydata1: Labelled Data for 5 Clusters
toydata2	toydata2: Labelled Data for 3 Clusters
wtd.stat.ang	Weighted extrinsic mean direction and mean resultant length