Gene Cluster Visualizations

---

Documentation for package ‘geneviewer’ version 0.1.10

• DESCRIPTION file.
• Package NEWS.

Help Pages

BRCA1_splice_variants	BRCA1 Splice Variants
erythromycin_BlastP	Erythromycin BlastP results
erythromycin_cluster	Erythromycin Gene Cluster Data
gbk_features_to_df	Convert GenBank Features to Data Frame
GC_align	Align gene clusters
GC_annotation	Add Annotations to a GC_chart
GC_chart	Create a GC Chart Visualization
GC_chartOutput	Shiny bindings for geneviewer
GC_cluster	Modify Cluster Settings
GC_clusterFooter	Add a Footer to Each Cluster in a GC Chart
GC_clusterLabel	Set or Update Cluster Labels for a GC Chart
GC_clusterTitle	Update cluster Title of a GC Chart Cluster
GC_color	Update Color Scheme in Gene Chart
GC_coordinates	Modify Coordinates in a GC Chart
GC_genes	Modify Gene Characteristics within a Chart
GC_grid	Update Grid Display of a GC Chart Cluster
GC_labels	Add Labels to Each Cluster in a GC Chart
GC_legend	Set Legend for a Gene Chart
GC_links	Add Links to GC Chart
GC_normalize	Normalize Gene Clusters in a Genomic Chart
GC_scale	Update Scale of a GC Chart Cluster
GC_scaleBar	Update Scale Bar of a GC Chart Cluster
GC_sequence	Update Sequence Display of a GC Chart Cluster
GC_title	Add Title to a GC_chart
GC_tooltip	Set Tooltip for a Gene Chart
GC_trackMouse	Track Mouse Movement in a GC_chart
GC_transcript	Modify Transcript Characteristics within a Chart
genbank_to_fasta	Convert GenBank to FASTA Format
geneviewer-shiny	Shiny bindings for geneviewer
get_introns	Calculate Intron Positions Based on Exons
hs_dystrophin_transcripts	Human Dystrophin Transcripts Data
human_hox_genes	Human HOX Gene Cluster Data
mummer_alignment	Perform Sequence Alignment Using MUMmer
ophA_clusters	ophA Gene Cluster from Omphalotus olearius
protein_blast	Perform Protein BLAST Analysis Within Specified Clusters
read_bed	Read BED Files
read_fasta	Read Protein Sequences from FASTA Files
read_gbk	Read Data from GenBank Files
read_gff	Read GFF Files
renderGC_chart	Shiny bindings for geneviewer