Modeling Species Distributions in Three Dimensions

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Documentation for package ‘voluModel’ version 0.2.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bottomRaster	Bottom raster generation
centerPointRasterTemplate	Center Point Raster Template
cleanDepth	Clean and flag coordinates based on intersection with a land polygon, intersection with a bathymetry layer, and/or by a given depth range
depthMatch	Match the depth values given in an occurrence dataset to the depth slice values of a user provided spatRaster stack
diversityStack	Diversity stack
downsample	Occurrence downsampling
env_stack_transform	Coverts a list of 'SpatRaster' stacks where the elements are environmental variables and the layers are depths to a list of SpatRaster stacks where the elements are depths and the layers are environmental variables
interpolateRaster	Interpolate patchily sampled rasters
marineBackground	Marine background shapefile generation
maxent_3D	Create 3D Ecological Niche Models with Maxent
MESS3D	Calculate MESS
mSampling2D	2D background sampling
mSampling3D	3D background sampling
oneRasterPlot	Single raster plot
partition_3D	Create 3D partitions
plotLayers	Plotting 3D model in 2D
pointCompMap	Comparative point mapping
pointMap	Point mapping
rasterComp	Comparative raster mapping
smoothRaster	Smooth rasters
threshold_3D	Test different threshold levels and produce presence/absence layers for 3D models
transectPlot	Plot vertical sample
xyzSample	Sampling from a 'SpatRaster' vector using 3D coordinates