Package: ubms
Version: 1.2.7
Date: 2024-09-30
Title: Bayesian Models for Data from Unmarked Animals using 'Stan'
Authors@R: person("Ken", "Kellner", email="contact@kenkellner.com", 
                  role=c("cre","aut"))
Depends: R (>= 3.4.0), unmarked
Imports: ggplot2 (>= 2.0.0), gridExtra, loo, Matrix (>= 1.5-0),
        methods, pbapply, Rcpp (>= 0.12.0), reformulas, rlang,
        RSpectra, rstan (>= 2.26.0), rstantools (>= 2.0.0), stats
Suggests: knitr, raster, rmarkdown, terra, testthat
VignetteBuilder: knitr
Description: Fit Bayesian hierarchical models of animal abundance and occurrence
    via the 'rstan' package, the R interface to the 'Stan' C++ library.
    Supported models include single-season occupancy, dynamic occupancy, and
    N-mixture abundance models. Covariates on model parameters are specified
    using a formula-based interface similar to package 'unmarked', while also
    allowing for estimation of random slope and intercept terms. References:
    Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>;
    Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
License: GPL (>= 3)
URL: https://biodiverse.github.io/ubms/
BugReports: https://github.com/biodiverse/ubms/issues
Encoding: UTF-8
RoxygenNote: 7.3.2
Biarch: true
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppArmadillo (>=
        0.9.300.2.0), RcppEigen (>= 0.3.3.3.0), rstan (>= 2.26.0),
        StanHeaders (>= 2.26.0), RcppParallel (>= 5.0.2)
SystemRequirements: GNU make
Collate: 'RcppExports.R' 'submodel.R' 'response.R' 'inputs.R' 'fit.R'
        'posterior_predict.R' 'posterior_linpred.R' 'fitted.R' 'gof.R'
        'occu.R' 'colext.R' 'missing.R' 'distsamp.R' 'fitlist.R'
        'kfold.R' 'occuTTD.R' 'multinomPois.R' 'occuRN.R' 'pcount.R'
        'loglik.R' 'mb_chisq.R' 'plot_effects.R' 'plot_posteriors.R'
        'predict.R' 'priors.R' 'ranef.R' 'residuals.R' 'spatial.R'
        'stanmodels.R' 'test-helpers.R' 'ubms-package.R'
        'ubmsFit-methods.R' 'ubmsFitList-methods.R' 'umf.R' 'utils.R'
NeedsCompilation: yes
Packaged: 2024-09-30 20:21:35 UTC; ken
Author: Ken Kellner [cre, aut]
Maintainer: Ken Kellner <contact@kenkellner.com>
Repository: CRAN
Date/Publication: 2024-10-01 05:20:02 UTC
Built: R 4.5.0; aarch64-apple-darwin20; 2025-01-20 00:53:07 UTC; unix
Archs: ubms.so.dSYM
