spqrp-package	spqrp-package
by_isolation_forest	by_isolation_forest
by_isolation_forest_plot	by_isolation_forest_plot
calculate_pairwise_distances	calculate_pairwise_distances
check_input_data_format	check_input_data_format
cluster_samples_iteratively	cluster_samples_iteratively
cohort_a_ranking	cohort_a_ranking
filter_by_occurrence	filter_by_occurrence
get_distances	get_distances
get_evaluation_metrics	get_evaluation_metrics
get_nearest_neighbours	get_nearest_neighbours
get_sample_relations_by_cutoff	get_sample_relations_by_cutoff
get_threshold	get_threshold
log_transform	log_transform
long_to_wide	long_to_wide
normalize_medianintensity	normalize_medianintensity
optimize_parameters	optimize_parameters
percentile_cutoff	percentile_cutoff
perform_distance_evaluation_on_ranked_proteins	perform_distance_evaluation_on_ranked_proteins
plate_correct_residuals_by_protein	plate_correct_residuals_by_protein
plot_distances_neighbours_with_coloring_hue	plot_distances_neighbours_with_coloring_hue
plot_distribution_of_pairwise_dist	plot_distribution_of_pairwise_dist
plot_distribution_with_highlights	plot_distribution_with_highlights
print.spqrp_train	print.spqrp_train
remove_outlier_samples	remove_outlier_samples
retrieve_ranking	retrieve_ranking
revert_log_transform	revert_log_transform
run_clustering	run_clustering
spqrp	spqrp-package
spqrp_example_data	spqrp_example_data
spqrp_example_path	spqrp_example_path
train_pairwise_balanced_rand_forest	train_pairwise_balanced_rand_forest
train_with_normalise	train_with_normalise
