Visualizing Meta-Analyses with Orchard Plots and Prediction
Intervals
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Documentation for package ‘orchaRd’ version 2.2.1
Help Pages
| .calc.kurtosis | .calc.kurtosis |
| .calc.skewness | .calc.skewness |
| .colour_blind_palette | Colour blind palette |
| .lnM | .lnM |
| .MSb | .MSb |
| .MSw | .MSw |
| .r.to.zr | Fisher Z-transformation of Correlation Coefficient |
| .safe_lnM_dep | SAFE bootstrap : dependent samples |
| .safe_lnM_indep | SAFE bootstrap : independent samples |
| .sv_jack | Jackknife Estimation of Skewness and Kurtosis for computing sampling variances |
| .v_lnM | .v_lnM |
| .zr.variance | Variance of Fisher Z-transformed Correlation |
| bubble_plot | bubble_plot |
| caterpillars | caterpillars |
| cor_diff | Correlation Difference |
| cvh1_ml | cvh1_ml |
| cvh2_ml | cvh2_ml |
| eklof | eklof |
| english | english |
| firstup | firstup |
| fish | fish |
| geom_pub_stats_naka | geom_pub_stats_naka |
| geom_pub_stats_yang | geom_pub_stats_yang |
| get_data_raw | get_data_raw |
| get_data_raw_cont | get_data_raw_cont |
| get_ints_dat | get_ints_dat |
| glmmTMB_to_rma | Convert a glmmTMB model to an rma.mv-compatible object |
| i2_ml | i2_ml |
| leave_one_out | Leave-One-Out Analysis for Meta-Analytic Models |
| lim | lim |
| m1_ml | m1_ml |
| m2_ml | m2_ml |
| magnitude_effects | Magnitude Effects using SAFE Bootstrap |
| matrix_i2 | matrix_i2 |
| ml_cvh1 | ml_cvh1 |
| ml_cvh2 | ml_cvh2 |
| ml_m1 | ml_m1 |
| ml_m2 | ml_m2 |
| mod_results | mod_results |
| moment_effects | moment_effects |
| num_studies | num_studies |
| orchard_leave1out | Orchard Plot for Leave-One-Out Analysis |
| orchard_plot | orchard_plot |
| phylo_matrix | phylo_matrix |
| pottier | pottier |
| pred_interval_esmeans | pred_interval_esmeans |
| print.orchard | print.orchard |
| pub_bias_plot | pub_bias_plot |
| R2_calc | R2_calc |
| r2_ml | r2_ml |
| ratio_i2 | ratio_i2 |
| submerge | submerge |
| VCV_dARR | VCV_dARR |
| weighted_var | weighted_var |
| Zr_to_r | Zr_to_r |