A Functional Data Analysis Package for Spatial Single Cell Data

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Documentation for package ‘mxfda’ version 0.2.2-1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

add_summary_function	Add Summary Function
bivariate	bivariate
entropy	Entropy
extract_entropy	extract_entropy
extract_fpca_object	Extract FPCA object
extract_fpca_scores	Extract FPCA scores
extract_model	Extract Model
extract_spatial_summary	Summarise spatial data in mxFDA object
extract_summary_functions	Extract Summary Functions
extract_surface	Extract Surface
filter_spatial	Filter Spatial data
lung_df	Multiplex imaging data from a non-small cell lung cancer study.
lung_FDA	Multiplex imaging data from a non-small cell lung cancer study
make_mxfda	Make mxFDA class object
ovarian_FDA	Multiplex imaging data from an ovarian cancer tumor microarray
plot.afcmSurface	Plot afcm object
plot.lfcmSurface	Plot lfcm surface
plot.mxFDA	Plot mxFDA object
plot.sofr	Plot sofr object
plot_fpc	Create plot of mean +/- scaled eigenfunctions from FPCA
plot_mfpc	Create plot of mean +/- scaled eigenfunctions from FPCA
run_fcm	Run Function Cox Models
run_fpca	run_fpca
run_mfcm	Run function Cox models for data with multiple samples per subject
run_mfpca	run_fpca
run_sofr	Run Scalar on Function Regression
summary.mxFDA	Summary method for object of class 'mxFDA'
univariate	univariate