This package is the R binding of the `genoaligner` C++ alignment library
(https://github.com/alrobles/genoaligner), distributed under the MIT License
(see LICENSE).

PARTIAL DERIVATION NOTICE

The edit-distance / wavefront (WFA) core is a transcription of the published
WFA formulation, taken from the reference implementation that the C++
`genoaligner` library itself transcribes:

    github.com/smarco/WFA
    Copyright (c) 2017 Santiago Marco-Sola
    MIT License

Specifically, the offset macros (WAVEFRONT_H / WAVEFRONT_V /
WAVEFRONT_OFFSET_NULL), the compute-next step (wavefront_compute_edit_idm)
and the traceback walk originate from that source. The MIT terms of the
original apply to those portions, and its copyright notice is reproduced
above.

The Smith-Waterman core, the R wrapper, the validation harness and the
documentation in this repository are original work by the copyright holder.