Spatially Explicit Population Models of Disease Transmission in Wildlife

Documentation for package ‘epizootic’ version 1.0.0

aspatial_siri	Helper Function for Seasonal SIRI Simulation
bsl_raster	Raster of breeding season length for the house finch
check_aspatial_siri_inputs	Helper function to check the validity of inputs to the 'siri_model_summer' and 'siri_model_winter' functions.
check_simulator_inputs	Helper function to check the validity of inputs to the 'disease_simulator' function.
DiseaseModel	R6 class representing a disease model of the _Mycoplasma gallisepticum_ outbreak in _Haemorhous mexicanus_
disease_dispersal	Nested functions for population dispersal in a disease ecology simulation.
disease_results	Nested functions for initializing, calculating and collecting disease simulator results.
disease_simulator	Stage-based seasonal spatially explicit population-level disease model.
disease_transformation	Nested functions for a user-defined transformation of a population affected by a disease outbreak.
disease_transitions	Nested functions for stage- and compartment-based population transitions in an outbreak.
finch_region	Study region for house finch conjunctivitis simulations
habitat_suitability	House finch habitat suitability
initial_abundance	Initial house finch abundance
siri_model_summer	Simulate a _Mycoplasma gallisepticum_ Outbreak in the Breeding Season
siri_model_winter	Simulate a _Mycoplasma gallisepticum_ Outbreak in the Non-Breeding Season