Interface to 'dgpsi' for Deep and Linked Gaussian Process Emulations

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Documentation for package ‘dgpsi’ version 2.5.0

Help Pages

alm Locate the next design point(s) for a (D)GP emulator or a bundle of (D)GP emulators using Active Learning MacKay (ALM)
alm.bundle Locate the next design point(s) for a (D)GP emulator or a bundle of (D)GP emulators using Active Learning MacKay (ALM)
alm.dgp Locate the next design point(s) for a (D)GP emulator or a bundle of (D)GP emulators using Active Learning MacKay (ALM)
alm.gp Locate the next design point(s) for a (D)GP emulator or a bundle of (D)GP emulators using Active Learning MacKay (ALM)
continue Continue training a DGP emulator
deserialize Restore the serialized emulator
design Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
design.bundle Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
design.dgp Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
design.gp Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
dgp Deep Gaussian process emulator construction
draw Validation and diagnostic plots for a sequential design
draw.bundle Validation and diagnostic plots for a sequential design
draw.dgp Validation and diagnostic plots for a sequential design
draw.gp Validation and diagnostic plots for a sequential design
get_thread_num Get the number of threads
gp Gaussian process emulator construction
init_py 'python' environment initialization
lgp Linked (D)GP emulator construction
mice Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
mice.bundle Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
mice.dgp Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
mice.gp Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
nllik Calculate the predictive negative log-likelihood
pack Pack GP and DGP emulators into a bundle
plot Validation plots of a constructed GP, DGP, or linked (D)GP emulator
plot.dgp Validation plots of a constructed GP, DGP, or linked (D)GP emulator
plot.gp Validation plots of a constructed GP, DGP, or linked (D)GP emulator
plot.lgp Validation plots of a constructed GP, DGP, or linked (D)GP emulator
predict Prediction from GP, DGP, or linked (D)GP emulators
predict.dgp Prediction from GP, DGP, or linked (D)GP emulators
predict.gp Prediction from GP, DGP, or linked (D)GP emulators
predict.lgp Prediction from GP, DGP, or linked (D)GP emulators
prune Static pruning of a DGP emulator
read Load the stored emulator
serialize Serialize the constructed emulator
set_id Set Emulator ID
set_imp Reset number of imputations for a DGP emulator
set_seed Random seed generator
set_thread_num Set the number of threads
set_vecchia Add or remove the Vecchia approximation
summary Summary of a constructed GP, DGP, or linked (D)GP emulator
summary.dgp Summary of a constructed GP, DGP, or linked (D)GP emulator
summary.gp Summary of a constructed GP, DGP, or linked (D)GP emulator
summary.lgp Summary of a constructed GP, DGP, or linked (D)GP emulator
trace_plot Trace plot for DGP hyperparameters
unpack Unpack a bundle of (D)GP emulators
update Update a GP or DGP emulator
update.dgp Update a GP or DGP emulator
update.gp Update a GP or DGP emulator
validate Validate a constructed GP, DGP, or linked (D)GP emulator
validate.dgp Validate a constructed GP, DGP, or linked (D)GP emulator
validate.gp Validate a constructed GP, DGP, or linked (D)GP emulator
validate.lgp Validate a constructed GP, DGP, or linked (D)GP emulator
vigf Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
vigf.bundle Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
vigf.dgp Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
vigf.gp Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
window Trim the sequence of hyperparameter estimates within a DGP emulator
write Save the constructed emulator