Conditionally Symmetric Multidimensional Gaussian Mixture Model
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Documentation for package ‘csmGmm’ version 0.6.0
Help Pages
| calc_dens_cor | calc_dens_cor.R |
| calc_dens_ind_2d | calc_dens_ind.R |
| calc_dens_ind_3d | Calculate J trivariate normal densities (all dimensions are independent) under fitted csmGmm. |
| calc_dens_ind_multiple | Calculate the density of K-dimensional multivariate normal (all dimensions are independent) under fitted acsGmm. |
| check_incongruous | check_incongruous.R |
| create_plots | create_plots.R |
| find_2d | Tells if row x if allTestStats is an incongruous result (has a higher lfdr than a set of test statistics with lower magnitudes). For K=2 case. |
| find_3d | Tells if row x if allTestStats is an incongruous result (has a higher lfdr than a set of test statistics with lower magnitudes). For K=3 case. |
| find_4d | Tells if row x if allTestStats is an incongruous result (has a higher lfdr than a set of test statistics with lower magnitudes). For K=4 case. |
| find_max_means | find_max_means.R |
| generate_init_lists | generate_init_lists.R |
| get_marginal_mixture | diagnostic_plot.R |
| plot_fit_hist | Histogram of the observed test statistics with the fitted marginal mixture density overlaid. |
| prepare_csmgmm_data | prepare_csmgmm_data.R |
| process_lfdr_results | process_lfdr_results.R |
| read_gwas_one | read_gwas.R |
| read_gwas_set | Read 2-5 GWAS Catalog summary-statistics files into the current environment. |
| symm_fit_cor_EM | symm_fit_cor.R |
| symm_fit_cor_EM_fulllik | symm_fit_cor_fulllik.R |
| symm_fit_cor_EM_noAssumption | symm_fit_cor_noAssumption.R |
| symm_fit_cor_EM_rho | symm_fit_cor_rho.R |
| symm_fit_ind_EM | symm_fit_ind.R |
| symm_fit_ind_EM_noAssumption | symm_fit_ind_noAssumption.R |