Robust Ecological and Fisheries Data Analysis and Visualization

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Documentation for package ‘aquats’ version 1.2.2

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ancova_analysis Analysis of Covariance (ANCOVA) with Adjusted Means Visualization
calc_diversity Calculate Comprehensive Alpha Diversity Indices
calc_metal_indices Heavy Metal Pollution Indices with Confidence Intervals
calc_wqi Weighted Arithmetic Water Quality Index (WAWQI) with Confidence Intervals
cluster_dendrogram Hierarchical Clustering Dendrogram for Aquatic Communities
community_master Multi-Trophic Community Abundance Master List
compare_two_groups Two-Sample Comparison with Automated F-Test, t-Test, and Visualization
correlation_heatmap Flexible Correlation Matrix and Heatmap Generator for Environmental Data
dbrda_analysis Distance-based Redundancy Analysis (db-RDA) Triplot
glm_analysis Generalized Linear Modeling (GLM) for Aquatic and Ecological Data
hilsa_master Comprehensive Master Dataset for Hilsa Shad Ecology and Statistics
manova_analysis Multivariate Analysis of Variance (MANOVA) with Alternative Visualizations
mantel_heatmap_analysis Integrated Environmental Correlation and Multi-Community Mantel Network
nmds_analysis Non-metric Multidimensional Scaling (NMDS) Analysis for Aquatic Communities
one_way_anova One-Way Analysis of Variance (ANOVA) with Faceting & Visualization
pca_community_biplot Principal Component Analysis (PCA) Community Biplot
pca_correlation_circle PCA Correlation Circle with cos2 Gradient for Environmental Parameters
permanova_analysis Permutational Multivariate Analysis of Variance (PERMANOVA)
plot_bar Flexible and Batch Publication-Ready Bar and Lollipop Plots
plot_circular_bar Publication-Grade Circular or Radial Bar Plot
plot_diversity Visualize and Test Alpha Diversity Patterns
plot_donut Publication-Ready Single, Double, and Triple-Layered Donut Plots
plot_histogram Publication-Ready Histogram and Density Plot
plot_likert Publication-Ready Likert Scale Visualization
plot_lollipop Flexible and Batch Publication-Ready Bar and Lollipop Plots
plot_metal_indices Visualize Heavy Metal Pollution Indices with Confidence Intervals
plot_pie3d Publication-Ready 3D Depth Pie Chart
plot_sankey Publication-Ready Sankey and Alluvial Flow Diagram
plot_timeseries Publication-Ready Temporal Tracking and Factorial Time-Series Plots
plot_wqi Visualize Water Quality Index (WQI) with Confidence Intervals
rda_analysis Redundancy Analysis (RDA) Triplot
regression_analysis Parametric and Non-Linear Regression Analysis with Fitted Equations
simper_analysis Similarity Percentages (SIMPER) Analysis
specaccum_plot Publication-Ready Species Accumulation Curves
summarize_obs Comprehensive Observation Summary with Excel Export
test_chisq Chi-Square Test of Independence and Goodness-of-Fit with Visualization
three_way_anova Three-Way Analysis of Variance (ANOVA) with Faceted Interaction Visualization
two_way_anova Two-Way Analysis of Variance (ANOVA) with Interaction & Faceting Visualization