Extinction Date Estimation from Sighting Records

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Documentation for package ‘EDE’ version 0.3.0

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brook2019 Reliability-weighted resampling of a sighting record (Brook et al., 2019)
burgman1995 Burgman, Grimson & Ferson (1995) tests for frequency sighting data
caley_barry2014 Caley & Barry (2014) Bayesian extinction probability from a detection record
dodo Sighting record of the dodo
ede_compare Apply every applicable method to one sighting record
ede_estimate Extinction date estimate
extinct_birds Sighting records of four possibly extinct birds, by evidence quality
ferret Sighting record of the black-footed ferret
jaric2010 Jaric & Ebenhard (2010) sighting-trend index
jaric_roberts2014 Reliability-adjusted extinction inference
kodikara2020 Kodikara et al. (2020) Bayesian extinction year from yearly sighting records
kodikara2021 Kodikara et al. (2021) extinction time with non-homogeneous Poisson sightings
lee2014 Lee et al. (2014) Bayesian extinction probability with certain and uncertain sightings
marshall1994 Marshall (1994) distribution-free confidence intervals on a range end-point
marshall1994_trend Marshall (1994) transposition test for a trend in gap size
marshall1997 Marshall (1997) generalized confidence interval for a range end-point
mcinerny2006 McInerny, Roberts, Davy & Cribb (2006) sighting-rate persistence test
monk_seal Sighting record of the Caribbean monk seal
ole Optimal Linear Estimation of extinction date
orchid Collection record of a Mauritian orchid
robson1964 Robson & Whitlock (1964) truncation point estimator
rout2009 Rout et al. (2009) Bayes factor with a declining sighting rate
rout2009_absences Optimal number of absent surveys before declaring eradication
sighting_data Construct a validated sighting record
solow1993 Solow (1993a) constant-rate persistence test
solow1993b Solow (1993b) declining-population persistence test
solow1993_bayes Solow (1993a) Bayes factor for persistence
solow2005 Solow (2005) Weibull extreme-value persistence test
solow_roberts2003 Solow & Roberts (2003) nonparametric persistence test
strauss1989 Strauss & Sadler (1989) confidence interval for the end of a range
strauss1989_bayes Strauss & Sadler (1989) Bayesian estimate of the end of a range
strauss1989_curve Confidence curve for the Strauss & Sadler (1989) upper bound
thompson2013 Thompson et al. (2013) probability of persistence with uncertain sightings
thompson2017 Thompson et al. (2017) iterative probability that a taxon is extant
thompson2019 Thompson et al. (2019) Bayesian updating of the probability of persistence
weiss_marshall1999 Weiss & Marshall (1999) Bayesian end point for discretely sampled sections
weiss_marshall1999_prior Beta prior for p pooled from related records (Weiss & Marshall, 1999)