| csv2list |
Convert metabolite set / csv to list |
| fasting_mseapca |
Metabolome data from a fasting mouse study |
| list2xml |
Save compound set as XML file |
| msea_ora |
Wrapper function for over-representation analysis (ORA) |
| msea_ora_range |
Wrapper function for Over-Representation Analysis with p-value range estimation |
| msea_sub |
MSEA by Subramanian et al. |
| ora_all |
ORA using all metabolites |
| ora_bino |
Over-representation analysis with binomial resampling adjustment |
| ora_det |
ORA using detected metabolites |
| ora_est |
ORA adjusting for undetected metabolites |
| ora_full |
Over-representation analysis with full enumeration of undetected metabolite patterns |
| pathbank2list |
Generate metabolite set list from PathBank database |
| pathway |
Example of metabolite set list for fasting and covid19 datasets |
| read_pathway |
Read metabolite set file (*.xml) |
| setlabel |
Generate binary label matrix of metabolite set |
| ssea_ora |
Single sample enrichment analysis by over representation analysis |
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)