Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines

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Documentation for package ‘compareMCMCs’ version 0.6.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

addMetrics	Manipulate metrics in one or more 'MCMCresult' object(s)
applyConversions	Apply a set of parameter conversions to MCMC output
builtin_MCMCs	MCMC plugins that come with the compareMCMCs package
clearMetrics	Manipulate metrics in one or more 'MCMCresult' object(s)
combineMetrics	Combine all metrics from a list of 'MCMCresult' objects.
compareMCMCs	Run a set of MCMCs for performance comparison
getMetrics	Register, unregister, or access registered MCMC metric functions for use by 'compareMCMCs' or 'addMetrics'
getPageComponents	Register, unregister and access page components used by 'make_MCMC_comparison_pages'
make_MCMC_comparison_pages	Create html output with comparisons of MCMC results
MCMCdef_dummy	MCMC plugins that come with the compareMCMCs package
MCMCdef_jags	MCMC plugins that come with the compareMCMCs package
MCMCdef_stan	MCMC plugins that come with the compareMCMCs package
MCMCmetric_CI95	Built-in metrics for 'MCMCresult' objects
MCMCmetric_CI95low	Built-in metrics for 'MCMCresult' objects
MCMCmetric_CI95upp	Built-in metrics for 'MCMCresult' objects
MCMCmetric_efficiency	Built-in metrics for 'MCMCresult' objects
MCMCmetric_ESS	Built-in metrics for 'MCMCresult' objects
MCMCmetric_mean	Built-in metrics for 'MCMCresult' objects
MCMCmetric_median	Built-in metrics for 'MCMCresult' objects
MCMCmetric_sd	Built-in metrics for 'MCMCresult' objects
MCMCresult	R6 class to hold MCMC samples, timing results, and metrics
metrics	Built-in metrics for 'MCMCresult' objects
modifyMetrics	Manipulate metrics in one or more 'MCMCresult' object(s)
pageComponents	Register, unregister and access page components used by 'make_MCMC_comparison_pages'
registerMCMCengine	Register an MCMC function for use by compareMCMCs
registerMetrics	Register, unregister, or access registered MCMC metric functions for use by 'compareMCMCs' or 'addMetrics'
registerPageComponents	Register, unregister and access page components used by 'make_MCMC_comparison_pages'
renameMCMC	Rename an MCMC method throughout a list of 'MCMCresult' objects
unregisterMetric	Register, unregister, or access registered MCMC metric functions for use by 'compareMCMCs' or 'addMetrics'
unregisterPageComponents	Register, unregister and access page components used by 'make_MCMC_comparison_pages'