A General Framework for Combining Ecosystem Models

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Documentation for package ‘EcoEnsemble’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

EcoEnsemble-package	A general framework for combining ecosystem models
EcoEnsemble	A general framework for combining ecosystem models
EnsembleData	Constructor for the 'EnsembleData' class
EnsembleData-class	A class to hold the Ensemble data
EnsembleFit	The constructor for the 'EnsembleFit' object
EnsembleFit-class	A class to hold the samples or point estimates from the ensemble model.
EnsemblePrior	Constructor for the 'EnsemblePrior' class
EnsemblePrior-class	A class to hold the priors for the ensemble model.
EnsembleSample	A constructor for the 'EnsembleSample' object
EnsembleSample-class	A class to hold samples of the ensemble model
fit_ensemble_model	Fits the ensemble model
generate_sample	Generate samples from a fitted ensemble model.
gen_sample	Generate samples from a fitted ensemble model.
get_mcmc_ensemble_model	Return the compiled ensemble model Stan object.
get_mle	Generate samples from a fitted ensemble model.
get_parameters	Generate samples from a fitted ensemble model.
get_transformed_data	Generate samples from a fitted ensemble model.
get_transformed_data_dri	Generate samples from a fitted ensemble model.
IndLTPrior	Constructor for the 'EnsemblePrior' class
IndLTPrior-class	A class to hold the priors for the ensemble model.
IndSTPrior	Constructor for the 'EnsemblePrior' class
IndSTPrior-class	A class to hold the priors for the ensemble model.
KalmanFilter_back	Backwards Kalman filter
plot.EnsembleSample	Plot the ensemble output
prior_ensemble_model	Generate samples of parameters from prior distribution
sample_prior	Generate samples of latent variables from prior predictive distribution
ShaSTPrior	Constructor for the 'EnsemblePrior' class
ShaSTPrior-class	A class to hold the priors for the ensemble model.
Sigma_ewe	Ecopath with EcoSim Sigma
Sigma_fs	FishSUMS Sigma
Sigma_lm	LeMans Sigma
Sigma_miz	mizer Sigma
Sigma_obs	Stock assessment Sigma
SSB_ewe	Ecopath with EcoSim SSB
SSB_fs	FishSUMS SSB
SSB_lm	LeMans SSB
SSB_miz	mizer SSB
SSB_obs	Stock assessment SSB
TruthPrior	Constructor for the 'EnsemblePrior' class
TruthPrior-class	A class to hold the priors for the truth model in the ensemble framework