Transition Network Analysis (TNA)

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Documentation for package ‘tna’ version 0.3.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

tna-package	The 'tna' package.
as.igraph.group_tna	Coerce a specific group from a 'group_tna' object to an 'igraph' object.
as.igraph.tna	Coerce a 'tna' object to an 'igraph' object.
betweenness_network	Build and Visualize a Network with Edge Betweenness
betweenness_network.tna	Build and Visualize a Network with Edge Betweenness
bootstrap	Bootstrap Transition Networks from Sequence Data
bootstrap.group_tna	Bootstrap Transition Networks from Sequence Data
bootstrap.tna	Bootstrap Transition Networks from Sequence Data
build_model	Build a Transition Network Analysis Model
build_model.data.frame	Build a Transition Network Analysis Model
build_model.default	Build a Transition Network Analysis Model
build_model.matrix	Build a Transition Network Analysis Model
build_model.stslist	Build a Transition Network Analysis Model
centralities	Calculate Centrality Measures for a Transition Matrix
centralities.group_tna	Calculate Centrality Measures for a Transition Matrix
centralities.matrix	Calculate Centrality Measures for a Transition Matrix
centralities.tna	Calculate Centrality Measures for a Transition Matrix
cliques	Identify Cliques in a Transition Network
cliques.group_tna	Identify Cliques in a Transition Network
cliques.tna	Identify Cliques in a Transition Network
communities	Community Detection for Transition Networks
communities.group_tna	Community Detection for Transition Networks
communities.tna	Community Detection for Transition Networks
ctna	Build a Transition Network Analysis Model
deprune	Restore a Pruned Transition Network Analysis Model
deprune.group_tna	Restore a Pruned Transition Network Analysis Model
deprune.tna	Restore a Pruned Transition Network Analysis Model
engagement	Example data on student engagement
engagement_mmm	Example mixed Markov model fitted to the 'engagement' data
estimate_centrality_stability	Estimate Centrality Stability
estimate_centrality_stability.group_tna	Estimate Centrality Stability
estimate_centrality_stability.tna	Estimate Centrality Stability
estimate_cs	Estimate Centrality Stability
estimate_cs.group_tna	Estimate Centrality Stability
estimate_cs.tna	Estimate Centrality Stability
ftna	Build a Transition Network Analysis Model
group_ctna	Build a Transition Network Analysis Model
group_ftna	Build a Transition Network Analysis Model
group_model	Build a grouped Transition Network Analysis Model
group_model.default	Build a grouped Transition Network Analysis Model
group_model.mhmm	Build a grouped Transition Network Analysis Model
group_regulation	Example data on group regulation
group_tna	Build a Transition Network Analysis Model
hist.group_tna	Plot a Histogram of Edge Weights for a 'group_tna' Object.
hist.tna	Plot a Histogram of Edge Weights in the Network
mmm_stats	Retrieve statistics from a mixture Markov model (MMM)
permutation_test	Compare Two Networks from Sequence Data Using Permutation Tests
plot.group_tna	Plot a grouped Transition Network Analysis Model
plot.group_tna_centralities	Plot Centrality Measures
plot.group_tna_cliques	Plot Found Cliques
plot.group_tna_communities	Plot Found Communities
plot.group_tna_stability	Plot Centrality Stability Results
plot.tna	Plot a Transition Network Analysis Model
plot.tna_centralities	Plot Centrality Measures
plot.tna_cliques	Plot Cliques of a TNA Network
plot.tna_communities	Plot Communities
plot.tna_permutation	Plot the Significant Differences from a Permutation Test
plot.tna_stability	Plot Centrality Stability Results
plot_compare	Plot the difference network between two models
plot_model	Plot a Transition Network Model from a Matrix of Edge Weights
print.group_tna	Print a 'group_tna' Object
print.group_tna_bootstrap	Print 'group_tna' Bootstrap Results
print.group_tna_centralities	Print Centrality Measures
print.group_tna_cliques	Print Found Cliques
print.group_tna_communities	Print Detected Communities
print.group_tna_stability	Print Centrality Stability Results
print.summary.group_tna	Print the summary of a grouped Transition Network Analysis Model
print.summary.group_tna_bootstrap	Print Bootstrap Summary for a Grouped Transition Network
print.summary.tna	Print a TNA Summary
print.summary.tna_bootstrap	Print Bootstrap Summary
print.tna	Print a 'tna' object
print.tna_bootstrap	Print Bootstrap Results
print.tna_centralities	Print Centrality Measures
print.tna_cliques	Print Found Cliques of a TNA Network
print.tna_communities	Print Detected Communities
print.tna_permutation	Print Permutation Test Results
print.tna_stability	Print Centrality Stability Results
prune	Prune a 'tna' network based on transition probabilities
prune.group_tna	Prune a 'tna' network based on transition probabilities
prune.tna	Prune a 'tna' network based on transition probabilities
pruning_details	Print Detailed Information on the Pruning Results
pruning_details.group_tna	Print Detailed Information on the Pruning Results
pruning_details.tna	Print Detailed Information on the Pruning Results
rename_groups	Rename clusters
reprune	Restore Previous Pruning of a Transition Network Analysis Model
reprune.group_tna	Restore Previous Pruning of a Transition Network Analysis Model
reprune.tna	Restore a Pruned Transition Network Analysis Model
summary.group_tna	Calculate Summary of Network Metrics for a grouped Transition Network
summary.group_tna_bootstrap	Summarize Bootstrap Results for a Grouped Transition Network
summary.tna	Calculate Summary of Network Metrics for a Transition Network
summary.tna_bootstrap	Summarize Bootstrap Results
tna	Build a Transition Network Analysis Model