Dereplicate and Cherry-Pick Mass Spectrometry Spectra
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Documentation for package ‘maldipickr’ version 1.3.1
Help Pages
| check_spectra | Evaluate the spectra regularities |
| delineate_with_identification | Delineate clusters from taxonomic identifications |
| delineate_with_similarity | Delineate clusters from a similarity matrix |
| gather_spectra_stats | Aggregate spectra quality-check statistics |
| get_spectra_names | Extract spectra names and check for uniqueness |
| import_biotyper_spectra | Importing spectra from the Bruker MALDI Biotyper device |
| import_spede_clusters | Import clusters results generated by SPeDE |
| is_well_on_edge | Identify the wells on the plate's edge |
| merge_processed_spectra | Merge multiple processed spectra and peaks |
| pick_spectra | Cherry-pick Bruker MALDI Biotyper spectra |
| process_spectra | Process Bruker MALDI Biotyper spectra _à la_ Strejcek et al. (2018) |
| read_biotyper_report | Importing Bruker MALDI Biotyper CSV report |
| read_many_biotyper_reports | Importing a list of Bruker MALDI Biotyper CSV reports |
| remove_spectra | Remove (raw or processed) spectra |
| set_reference_spectra | Set a reference spectrum for each cluster |