The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at <doi:10.1186/s12859-018-2351-7>.
| Version: | 2.1 |
| Imports: | data.table, igraph, magrittr, plyr, parallel, som, visNetwork, reshape2, Rfast, HiClimR, methods |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-07-04 |
| DOI: | 10.32614/CRAN.package.wTO |
| Author: | Deisy Morselli Gysi, Andre Voigt, Tiago Miranda Fragoso, Eivind Almaas and Katja Nowick. |
| Maintainer: | Deisy Morselli Gysi <deisy.ccnr at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Citation: | wTO citation info |
| Materials: | README |
| CRAN checks: | wTO results |
| Reference manual: | wTO.pdf |
| Package source: | wTO_2.1.tar.gz |
| Windows binaries: | r-devel: wTO_2.1.zip, r-release: wTO_2.1.zip, r-oldrel: wTO_2.1.zip |
| macOS binaries: | r-release (arm64): wTO_2.1.tgz, r-oldrel (arm64): wTO_2.1.tgz, r-release (x86_64): wTO_2.1.tgz, r-oldrel (x86_64): wTO_2.1.tgz |
| Old sources: | wTO archive |
| Reverse suggests: | CoDiNA |
Please use the canonical form https://CRAN.R-project.org/package=wTO to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.