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The TileDB R package offers an R interface to the modern database by TileDB.
Documentation is available for the R package as well as for the TileDB API.
TileDB Embedded needs to be present, and can be installed first (from a package or from source) for the TileDB R package to build and link correctly. Alternatively, if no system installation is found, a precompiled shared library is used during the installation of this R package.
The TileDB R package has been published on CRAN and be installed directly via
> install.packages("tiledb")as usual.
The most recent released version can be installed from Github using the package remotes.
> if (!requireNamespace("remotes",quietly=TRUE)) install.packages("remotes")
> remotes::install_github("TileDB-Inc/TileDB-R")
...
> library(tiledb)
TileDB R 0.27.0 with TileDB Embedded 2.23.0 on Ubuntu 23.10.
See https://tiledb.com for more information about TileDB.
> help(package=tiledb)If the TileDB library is installed in a custom location, you need to pass the explicit path:
> remotes::install_github("TileDB-Inc/TileDB-R",
args="--configure-args='--with-tiledb=/path/to/tiledb'")Note that the TileDB R package is always developed and tested against the latest stable version of TileDB, but should also build against the newest development version.
The TileDB R package is Copyright 2018-2024 TileDB, Inc
MIT
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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